addPeaks: Add peaks based on z-scores and adjusted p-values
In FourCSeq: Package analyse 4C sequencing data

Description Usage Arguments Value Author(s)

Fragments are annotated to be a z-score peak (TRUE or FALSE) based on z-scores and fdr values for the given fragment

1	addPeaks(object, zScoreThresh = 2, fdrThresh = 0.1)

`object`	`FourC` object for which z-scores have been calculated.
`zScoreThresh`	Threshold on z-score that has to met by all replicates of a condition.
`fdrThresh`	Threshold on adjusted p-value that has to be met in at least one replicated of a condition.

FourC object with an additional assay 'peaks' of boolean values. The parameters of the call to addPeaks are stored as DataFrame peakParameter in the metadata slot.

Felix A. Klein, felix.klein@embl.de

data(fcf, package="FourCSeq")

fcf <- addPeaks(fcf)

FourCSeq documentation built on Nov. 8, 2020, 7:08 p.m.