Smooth the counts of neighboring fragments

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Description

Counts are smoothed using the number of fragments provided by binWidth. binWidth has to be an odd number so that an equal number of fragments to each side of the current fragment are used for smoothing.

Usage

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smoothCounts(object, assay = "counts", binWidth = 5)

Arguments

object

A FourC object.

assay

Assay name that will be smoothed.

binWidth

Integer vector of odd numbers.

Value

Returns an updated FourC object with smoothed counts for each binWidth as new assays.

Author(s)

Felix A. Klein, felix.klein@embl.de

See Also

FourC

Examples

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data(fc, package="FourCSeq")

fc <- smoothCounts(fc)
fc