smoothCounts: Smooth the counts of neighboring fragments
In FourCSeq: Package analyse 4C sequencing data
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Counts are smoothed using the number of fragments provided by binWidth.
binWidth has to be an odd number so that an equal number of fragments
to each side of the current fragment are used for smoothing.
Usage
1
smoothCounts(object, assay = "counts", binWidth = 5)
Arguments
object
A FourC object.
assay
Assay name that will be smoothed.
binWidth
Integer vector of odd numbers.
Value
Returns an updated FourC object with smoothed counts
for each binWidth as new assays.
Author(s)
Felix A. Klein, felix.klein@embl.de
See Also
Examples
1
2
3
4
FourCSeq documentation built on Nov. 8, 2020, 7:08 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Counts are smoothed using the number of fragments provided by binWidth. binWidth has to be an odd number so that an equal number of fragments to each side of the current fragment are used for smoothing.
Usage
1 | smoothCounts(object, assay = "counts", binWidth = 5)
|
Arguments
object |
A |
assay |
Assay name that will be smoothed. |
binWidth |
Integer vector of odd numbers. |
Value
Returns an updated FourC object with smoothed counts
for each binWidth as new assays.
Author(s)
Felix A. Klein, felix.klein@embl.de
See Also
Examples
1 2 3 4 |
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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