API for FourCSeq
Package analyse 4C sequencing data
| Global functions | |
|---|---|
| .onAttach | Source code |
| FourC | Man page Source code |
| FourC-class | Man page |
| addFragments | Man page Source code |
| addPeaks | Man page Source code |
| addViewpointFrags | Man page Source code |
| combineFragEnds | Man page Source code |
| countFragmentOverlaps | Man page Source code |
| countFragmentOverlapsSecondCutter | Man page Source code |
| distFitMonotone | Man page |
| distFitMonotoneSymmetric | Man page |
| fc | Man page |
| fcf | Man page |
| findViewpointFragments | Man page Source code |
| getAllResults | Man page Source code |
| getDifferences | Man page Source code |
| getDistAroundVp | Man page Source code |
| getFragments | Source code |
| getNormalizationFactors | Man page Source code |
| getReferenceSeq | Man page |
| getSites | Source code |
| getVST | Source code |
| getZScores | Man page Source code |
| normalizeRPM | Man page Source code |
| plotDifferences | Man page Source code |
| plotFits | Man page Source code |
| plotNormalizationFactors | Man page Source code |
| plotScatter | Man page Source code |
| plotSmoothScatter | Source code |
| plotVp | Source code |
| plotZScores | Man page Source code |
| saveGR | Source code |
| smoothCounts | Man page Source code |
| smoothHitPerCent | Man page Source code |
| updateObject,FourC-method | Man page |
| writeTrackFiles | Man page Source code |
