plotNormalizationFactors: Plot the estimated normalization factors.

In FourCSeq: Package analyse 4C sequencing data

Description

plotNormalizationFactors generates plots of the fits used to calculate the z-scores.

Usage

plotNormalizationFactors(object, dist = TRUE, sizeFactors = TRUE)

Arguments

object	A FourC object, after successfully calling getZScores.
dist	If TRUE (default), the normalizationFactors are plotted as a function for distance from the viewpoint. Otherwise they are plotted as a function of ranks.
sizeFactors	If TRUE, sizeFactors are calculated and plotted as horizontal bars.

Details

Plots are generated to visualize the results of the fits used to calculate the z-scores.

Author(s)

Felix A. Klein, [e-mail]

See Also

FourC, getDifferences, estimateSizeFactors

Examples

                       
data(fcf, package="FourCSeq")

fcf <- getDifferences(fcf)

plotNormalizationFactors(fcf)
 

FourCSeq documentation built on Nov. 8, 2020, 7:08 p.m.