plotDifferences: Plot differences
In FourCSeq: Package analyse 4C sequencing data
Description
Usage
Arguments
Author(s)
See Also
Examples
Description
plotDifferences generate plots to investigate the results
of getDifferences
Usage
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9
plotDifferences(
object,
plotWindows = c(1e+05, 1e+06),
textsize = 20,
diffThresh = 0.01,
controls = NULL,
txdb = NULL,
conditionAB = NULL
)
Arguments
object
A FourC object.
plotWindows
Window sizes around the viewpoint for which plots are generated.
textsize
Adjust text size.
diffThresh
Threshold on adjusted p-values calculated in the differential test.
controls
Auxiliary GRanges object that contains information about the
viewpoint and closest gene TSS.
txdb
Auxiliary TranscriptDb object that contains gene models for the
investigated organism.
conditionAB
Condition A and B, for which the comparison is plotted.
Author(s)
Felix A. Klein, felix.klein@embl.de
See Also
Examples
1
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data(fcf, package="FourCSeq")
fcf <- getDifferences(fcf, referenceCondition="WE_68h")
plotDifferences(fcf)
FourCSeq documentation built on Nov. 8, 2020, 7:08 p.m.
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Description Usage Arguments Author(s) See Also Examples
Description
plotDifferences generate plots to investigate the results
of getDifferences
Usage
1 2 3 4 5 6 7 8 9 | plotDifferences(
object,
plotWindows = c(1e+05, 1e+06),
textsize = 20,
diffThresh = 0.01,
controls = NULL,
txdb = NULL,
conditionAB = NULL
)
|
Arguments
object |
A |
plotWindows |
Window sizes around the viewpoint for which plots are generated. |
textsize |
Adjust text size. |
diffThresh |
Threshold on adjusted p-values calculated in the differential test. |
controls |
Auxiliary |
txdb |
Auxiliary |
conditionAB |
Condition A and B, for which the comparison is plotted. |
Author(s)
Felix A. Klein, felix.klein@embl.de
See Also
Examples
1 2 3 4 5 6 |
data(fcf, package="FourCSeq")
fcf <- getDifferences(fcf, referenceCondition="WE_68h")
plotDifferences(fcf)
|
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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