getAllResults: FourCSeq analysis results

In FourCSeq: Package analyse 4C sequencing data

Description

Using the DESEeq2 function results, getAllResults extracts results from a FourCSeq analysis giving base means across samples, log2 fold changes, standard errors, test statistics, p-values and adjusted p-values for all pair-wise conditions tested.

Usage

getAllResults(object, ...)

Arguments

object	FourC object for which z-scores and differences have been calculated.
...	Additional parameters that can be passed to results.

Value

DataFrame of results columns for all pairwise tests, with metadata columns of coefficient and test information

Author(s)

Felix A. Klein, [e-mail]

See Also

results

Examples

                       
data(fcf, package="FourCSeq")

fcf <- getDifferences(fcf, referenceCondition="WE_68h")

results <- getAllResults(fcf)
results

FourCSeq documentation built on Nov. 8, 2020, 7:08 p.m.