primirTSS: Prediction of pri-miRNA Transcription Start Site

A fast, convenient tool to identify the TSSs of miRNAs by integrating the data of H3K4me3 and Pol II as well as combining the conservation level and sequence feature, provided within both command-line and graphical interfaces, which achieves a better performance than the previous non-cell-specific methods on miRNA TSSs.

Getting started

Package details

AuthorPumin Li [aut, cre], Qi Xu [aut]
Bioconductor views GeneRegulation Genetics ImmunoOncology Preprocessing RNASeq Sequencing Transcription
MaintainerPumin Li <[email protected]>
LicenseGPL-2
Version1.4.0
URL https://github.com/ipumin/primirTSS
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("primirTSS")

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primirTSS documentation built on Oct. 31, 2019, 3:10 a.m.