sdchandra/CNAclinic: A Software Suite for Shallow Sequencing Copy Number Analysis

This package provides an end-to-end pipeline for copy number aberration (CNA) analysis of shallow coverage whole-genome sequencing (sWGS) data (< 0.5X).

Getting started

Package details

AuthorDineika Chandrananda
Bioconductor views Annotation CopyNumberVariation DNASeq Genetics GenomeAnnotation Preprocessing QualityControl Sequencing
Maintainer<[email protected]>
LicenseGPL
Version1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("sdchandra/CNAclinic")
sdchandra/CNAclinic documentation built on Dec. 23, 2017, 7:27 p.m.