sdchandra/CNAclinic: A Software Suite for Shallow Sequencing Copy Number Analysis

This package provides an end-to-end pipeline for copy number aberration (CNA) analysis of shallow coverage whole-genome sequencing (sWGS) data (< 0.5X).

Getting started

Package details

AuthorDineika Chandrananda
Bioconductor views Annotation CopyNumberVariation DNASeq Genetics GenomeAnnotation Preprocessing QualityControl Sequencing
Maintainer<dineika.chandrananda@cruk.cam.ac.uk>
LicenseGPL
Version1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("sdchandra/CNAclinic")
sdchandra/CNAclinic documentation built on May 29, 2019, 9:33 a.m.