API for sdchandra/CNAclinic
A Software Suite for Shallow Sequencing Copy Number Analysis

Global functions
.callThreshValidity Source code
.cghSegConversion Source code
.checkGeneInfo Source code
.convertChrom Source code
.fapply Source code
.flapply Source code
.getCBSSegments Source code
.getHMMcopySegments Source code
.makeSegments Source code
.plotAverageCount Source code
.plotHeatmap Source code
.plotPerSampOptwin Source code
.reorderByChrom Source code
.smoothOutliers Source code
.splitCollatedSegs Source code
.stabilisedTrans Source code
.toLog2 Source code
callData,CNAclinicData-method Man page
chromosomes,CNAclinicData-method Man page
combineData,CNAclinicData,CNAclinicData-method Man page
exportData Man page Source code
getGeneInfo Man page Source code
hist.ch Source code
join.mat Source code
opt.win Source code
opt.win.onesample Source code
optimal.onesample Source code
optimalBinsize Man page Source code
plotMultiSampleData,CNAclinicData-method Man page
plotSampleData,CNAclinicData-method Man page
processForSegmentation Man page Source code
read.pos Source code
runSegmentation Man page Source code
statsCNA,CNAclinicData-method Man page
subsetData,CNAclinicData-method Man page
summSegments,CNAclinicData-method Man page
sdchandra/CNAclinic documentation built on May 29, 2019, 9:33 a.m.