API for sdchandra/CNAclinic
A Software Suite for Shallow Sequencing Copy Number Analysis
| Global functions | |
|---|---|
| .callThreshValidity | Source code |
| .cghSegConversion | Source code |
| .checkGeneInfo | Source code |
| .convertChrom | Source code |
| .fapply | Source code |
| .flapply | Source code |
| .getCBSSegments | Source code |
| .getHMMcopySegments | Source code |
| .makeSegments | Source code |
| .plotAverageCount | Source code |
| .plotHeatmap | Source code |
| .plotPerSampOptwin | Source code |
| .reorderByChrom | Source code |
| .smoothOutliers | Source code |
| .splitCollatedSegs | Source code |
| .stabilisedTrans | Source code |
| .toLog2 | Source code |
| callData,CNAclinicData-method | Man page |
| chromosomes,CNAclinicData-method | Man page |
| combineData,CNAclinicData,CNAclinicData-method | Man page |
| exportData | Man page Source code |
| getGeneInfo | Man page Source code |
| hist.ch | Source code |
| join.mat | Source code |
| opt.win | Source code |
| opt.win.onesample | Source code |
| optimal.onesample | Source code |
| optimalBinsize | Man page Source code |
| plotMultiSampleData,CNAclinicData-method | Man page |
| plotSampleData,CNAclinicData-method | Man page |
| processForSegmentation | Man page Source code |
| read.pos | Source code |
| runSegmentation | Man page Source code |
| statsCNA,CNAclinicData-method | Man page |
| subsetData,CNAclinicData-method | Man page |
| summSegments,CNAclinicData-method | Man page |
