API for sdchandra/CNAclinic
A Software Suite for Shallow Sequencing Copy Number Analysis

Global functions
callData,CNAclinicData-method Man page
callThreshValidity Source code
cghSegConversion Source code
checkGeneInfo Source code
chromosomes,CNAclinicData-method Man page
combineData,CNAclinicData,CNAclinicData-method Man page
convertChrom Source code
exportData Man page Source code
fapply Source code
flapply Source code
getCBSSegments Source code
getGeneInfo Man page Source code
getHMMcopySegments Source code
hist.ch Source code
join.mat Source code
makeSegments Source code
opt.win Source code
opt.win.onesample Source code
optimal.onesample Source code
optimalBinsize Man page Source code
plotAverageCount Source code
plotHeatmap Source code
plotMultiSampleData,CNAclinicData-method Man page
plotPerSampOptwin Source code
plotSampleData,CNAclinicData-method Man page
processForSegmentation Man page Source code
read.pos Source code
reorderByChrom Source code
runSegmentation Man page Source code
smoothOutliers Source code
splitCollatedSegs Source code
stabilisedTrans Source code
statsCNA,CNAclinicData-method Man page
subsetData,CNAclinicData-method Man page
summSegments,CNAclinicData-method Man page
toLog2 Source code
sdchandra/CNAclinic documentation built on Dec. 23, 2017, 7:27 p.m.