statsCNA-CNAclinicData-method: Quantify and quality check copy-number profiles.
In sdchandra/CNAclinic: A Software Suite for Shallow Sequencing Copy Number Analysis
Description
Usage
Arguments
Value
Examples
Description
Calculate the fraction of genome altered (FGA) and/or the
median of the absolute values of all pairwise differences (MAPD) between
adjacent genomic bin values.
Usage
1
2
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## S4 method for signature 'CNAclinicData'
statsCNA(object, measure = c("FGA", "MAPD"),
digits = 3)
Arguments
object
a CNAclinicData object containing copy number calls
measure
Either "FGA", "MAPD" or both
Value
a matrix containing the values for the chosen measure(s) for each
sample
Examples
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2
3
4
## Not run:
vignette("CNAclinic")
## End(Not run)
sdchandra/CNAclinic documentation built on May 29, 2019, 9:33 a.m.
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Description Usage Arguments Value Examples
Description
Calculate the fraction of genome altered (FGA) and/or the median of the absolute values of all pairwise differences (MAPD) between adjacent genomic bin values.
Usage
1 2 3 | ## S4 method for signature 'CNAclinicData'
statsCNA(object, measure = c("FGA", "MAPD"),
digits = 3)
|
Arguments
object |
a CNAclinicData object containing copy number calls |
measure |
Either "FGA", "MAPD" or both |
Value
a matrix containing the values for the chosen measure(s) for each sample
Examples
1 2 3 4 | ## Not run:
vignette("CNAclinic")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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