plotMultiSampleData-CNAclinicData-method: Plots heat map of a cohort of samples

In sdchandra/CNAclinic: A Software Suite for Shallow Sequencing Copy Number Analysis

Plots heat map of a cohort of samples

Description

Plots heat map of a cohort of samples

Usage

## S4 method for signature 'CNAclinicData'
plotMultiSampleData(object, geneInfo = NULL,
  clusterGenes = FALSE, clusterSamples = FALSE, dataType = "summary",
  chromosomesFilter = c("X", "Y", "M", "MT"), outlierLog2R = 6,
  showCalls = TRUE, callThreshLog2R = c(-0.15, 0.15), callLegend = FALSE,
  legendSize = 12, legendKeySize = 2, legendPosition = "bottom",
  legendHoriz = TRUE, lossColor = "orange2", gainColor = "blue",
  pointColor = "black", neutralColor = "white", missingColor = "grey20",
  xlab = ifelse(is.null(geneInfo), "Chromosome", "Gene"), xaxt = "s",
  xaxSize = 10, ylab = NULL, yaxSize = 10, main = NULL, mainSize = 10)

Arguments

object

CNAclinicData.

Value

a ggplot2 object

Examples

     ## Not run: 
      vignette("CNAclinic")
     
## End(Not run)

sdchandra/CNAclinic documentation built on Aug. 8, 2024, 4:08 p.m.