getGeneInfo: Get transcript and position information for NCBI Entrez gene...

In sdchandra/CNAclinic: A Software Suite for Shallow Sequencing Copy Number Analysis

Get transcript and position information for NCBI Entrez gene IDs

Description

A helper function to generate gene information as input for plotSampleData function.

Usage

getGeneInfo(geneID, genome, transcript = "first")

Arguments

geneID	a numeric vector containing NCBI Entrez gene IDs
genome	Genome build used to align sequencing reads.
select	When select is "first" (default), the first transcript of the input genes are chosen. If "all", information of all possible transcripts will be contained in output.

Value

a data.frame containing the information for the geneID input. The data.frame has the columns named chromosome, start, end

Examples

     ## Not run: 
      vignette("CNAclinic")
     
## End(Not run)

sdchandra/CNAclinic documentation built on Aug. 8, 2024, 4:08 p.m.