Files in sdchandra/CNAclinic
A Software Suite for Shallow Sequencing Copy Number Analysis
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/CNAclinicData-accessors.R
R/callData.R
R/combineData.R
R/exportData.R
R/getGeneInfo.R
R/otimalBinsize.R
R/plotMultiSampleData.R
R/plotSampleData.R
R/processForSegmentation.R
R/runSegmentation.R
R/statsCNA.R
R/subsetData.R
R/summSegments.R
README.Rmd
README.md
data/.Rapp.history
data/CNAData.RData
data/exData.RData
man/.Rapp.history
man/CNAclinicData.Rd
man/callData-CNAclinicData-method.Rd
man/combineData-CNAclinicData-CNAclinicData-method.Rd
man/exportData.Rd
man/getGeneInfo.Rd
man/optimalBinsize.Rd
man/plotMultiSampleData-CNAclinicData-method.Rd
man/plotSampleData-CNAclinicData-method.Rd
man/processForSegmentation.Rd
man/runSegmentation.Rd
man/statsCNA-CNAclinicData-method.Rd
man/subsetData-CNAclinicData-method.Rd
man/summSegments-CNAclinicData-method.Rd
vignettes/CNAclinic.Rmd
vignettes/fig_avReadCounts.png
vignettes/fig_functions.png
vignettes/fig_multiSample_genes.png
vignettes/fig_optimalBinsize.png
vignettes/fig_withinSample.png
vignettes/fig_workflow.png
vignettes/references.bib
