gcrma: Background Adjustment Using Sequence Information

Background adjustment using sequence information

Author
Jean(ZHIJIN) Wu, Rafael Irizarry with contributions from James MacDonald <jmacdon@med.umich.edu> Jeff Gentry
Date of publication
None
Maintainer
Z. Wu <zwu@stat.brown.edu>
License
LGPL
Version
2.46.0

View on Bioconductor

Man pages

affinity.spline.coefs
Spline coefficients for estimation of affinity from probe...
bg.adjust.affinities
Background adjustment with sequence information (internal...
bg.adjust.gcrma
GCRMA background adjust (internal function)
bg.parameters.ns
Estimation of non-specific Binding Background Parameters
compute.affinities
Probe Affinity computation
fast.bkg
Internal functions for justGCRMA
gcrma
Robust Multi-Array expression measure using sequence...
gcrma.engine
GCRMA background adjust engine(internal function)
gcrma.engine2
GCRMA background adjust engine(internal function)
getCDF
Functions for Automatic Download of Packages
justGCRMA
Compute GCRMA Directly from CEL Files

Files in this package

gcrma/DESCRIPTION
gcrma/NAMESPACE
gcrma/R
gcrma/R/PAV.R
gcrma/R/base.profiles2.R
gcrma/R/bg.adjust.R
gcrma/R/bg.parameters.ns.R
gcrma/R/compute.affinities.R
gcrma/R/compute.affinities.nomm.R
gcrma/R/compute.affinities2.R
gcrma/R/gcrma.R
gcrma/R/gcrma.bg.transformation.R
gcrma/R/gcrma.bg.transformation.fast.R
gcrma/R/gcrma.engine.R
gcrma/R/gcrma.engine2.R
gcrma/R/getPackages.R
gcrma/R/justGCRMA.R
gcrma/build
gcrma/build/vignette.rds
gcrma/data
gcrma/data/affinity.spline.coefs.rda
gcrma/inst
gcrma/inst/NEWS
gcrma/inst/doc
gcrma/inst/doc/gcrma2.0.Rnw
gcrma/inst/doc/gcrma2.0.pdf
gcrma/man
gcrma/man/affinity.spline.coefs.Rd
gcrma/man/bg.adjust.affinities.Rd
gcrma/man/bg.adjust.gcrma.Rd
gcrma/man/bg.parameters.ns.Rd
gcrma/man/compute.affinities.Rd
gcrma/man/fast.bkg.Rd
gcrma/man/gcrma.Rd
gcrma/man/gcrma.engine.Rd
gcrma/man/gcrma.engine2.Rd
gcrma/man/getCDF.Rd
gcrma/man/justGCRMA.Rd
gcrma/src
gcrma/src/baseProfile.c
gcrma/src/computeAffinities.c
gcrma/src/postmean.c
gcrma/vignettes
gcrma/vignettes/gcrma2.0.Rnw