scater: Single-Cell Analysis Toolkit for Gene Expression Data in R

A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control and visualization.

Package details

AuthorDavis McCarthy [aut], Kieran Campbell [aut], Aaron Lun [aut, ctb], Quin Wills [aut], Vladimir Kiselev [ctb], Alan O'Callaghan [ctb, cre]
Bioconductor views Coverage DataImport DataRepresentation DimensionReduction GeneExpression ImmunoOncology Infrastructure Normalization Preprocessing QualityControl RNASeq Sequencing SingleCell Software Transcriptomics Visualization
MaintainerAlan O'Callaghan <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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scater documentation built on Feb. 28, 2021, 2:01 a.m.