iBMQ: integrated Bayesian Modeling of eQTL data

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integrated Bayesian Modeling of eQTL data

Author
Marie-Pier Scott-Boyer and Greg Imholte
Date of publication
None
Maintainer
Greg Imholte <gimholte@uw.edu>
License
Artistic-2.0
Version
1.14.0
URLs

View on Bioconductor

Man pages

calculateThreshold
Calculate PPA significance threshold leading to a desired...
eqtlClassifier
Classifying the eQTLs
eqtlFinder
eqtlFinder
eqtlMcmc
Bayesian Multiple eQTL mapping using MCMC
gene
Gene expression from whole eye tissue from n = 68 BXD RIS...
genepos
Gene position data frame
genotype.liver
A set of 290 SNPs from 60 F2 mice.
hotspotFinder
hotspotFinder
iBMQ-package
iBMQ : An Integrated Hierarchical Bayesian Model for...
map.liver
SNP position data frame
phenotype.liver
Gene expression from liver tissue from n = 60 F2 mice.
PPA.liver
A matrix with Posterior Probabilities of Association
probe.liver
Gene position data frame
snp
A set of 1700 SNP from 68 BXD RIS mice.
snppos
SNP position data frame

Files in this package

iBMQ/DESCRIPTION
iBMQ/NAMESPACE
iBMQ/R
iBMQ/R/calculateThreshold.R
iBMQ/R/eqtlClassifier.R
iBMQ/R/eqtlFinder.R
iBMQ/R/eqtlMcmc.R
iBMQ/R/hotspotFinder.R
iBMQ/aclocal.m4
iBMQ/build
iBMQ/build/vignette.rds
iBMQ/configure
iBMQ/configure.ac
iBMQ/data
iBMQ/data/PPA.liver.rda
iBMQ/data/datalist
iBMQ/data/gene.rda
iBMQ/data/genepos.rda
iBMQ/data/genotype.liver.rda
iBMQ/data/map.liver.rda
iBMQ/data/phenotype.liver.rda
iBMQ/data/probe.liver.rda
iBMQ/data/snp.rda
iBMQ/data/snppos.rda
iBMQ/data_application_note
iBMQ/data_application_note/data_application_note.R
iBMQ/inst
iBMQ/inst/CITATION
iBMQ/inst/README.txt
iBMQ/inst/doc
iBMQ/inst/doc/iBMQ.R
iBMQ/inst/doc/iBMQ.Rnw
iBMQ/inst/doc/iBMQ.pdf
iBMQ/man
iBMQ/man/PPA.liver.Rd
iBMQ/man/calculateThreshold.Rd
iBMQ/man/eqtlClassifier.Rd
iBMQ/man/eqtlFinder.Rd
iBMQ/man/eqtlMcmc.Rd
iBMQ/man/gene.Rd
iBMQ/man/genepos.Rd
iBMQ/man/genotype.liver.Rd
iBMQ/man/hotspotFinder.Rd
iBMQ/man/iBMQ-package.Rd
iBMQ/man/map.liver.Rd
iBMQ/man/phenotype.liver.Rd
iBMQ/man/probe.liver.Rd
iBMQ/man/snp.Rd
iBMQ/man/snppos.Rd
iBMQ/src
iBMQ/src/ARS.c
iBMQ/src/ARS.h
iBMQ/src/Makevars
iBMQ/src/Makevars.in
iBMQ/src/Makevars.win
iBMQ/src/RngStream.c
iBMQ/src/RngStream.h
iBMQ/src/iBMQ_common.c
iBMQ/src/iBMQ_common.h
iBMQ/src/main_parallel_sparse.c
iBMQ/src/main_parallel_sparse_constC.c
iBMQ/src/norm_gamma_generation.c
iBMQ/src/norm_gamma_generation.h
iBMQ/src/sparse.c
iBMQ/src/sparse.h
iBMQ/vignettes
iBMQ/vignettes/iBMQ.Rnw