iBMQ: integrated Bayesian Modeling of eQTL data
Version 1.16.0

integrated Bayesian Modeling of eQTL data

AuthorMarie-Pier Scott-Boyer and Greg Imholte
Bioconductor views GeneExpression Microarray Preprocessing SNP
Date of publicationNone
MaintainerGreg Imholte <gimholte@uw.edu>
LicenseArtistic-2.0
Version1.16.0
URL http://www.rglab.org
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("iBMQ")

Getting started

Package overview

Popular man pages

eqtlClassifier: Classifying the eQTLs
eqtlMcmc: Bayesian Multiple eQTL mapping using MCMC
genepos: Gene position data frame
genotype.liver: A set of 290 SNPs from 60 F2 mice.
iBMQ-package: iBMQ : An Integrated Hierarchical Bayesian Model for...
phenotype.liver: Gene expression from liver tissue from n = 60 F2 mice.
snp: A set of 1700 SNP from 68 BXD RIS mice.
See all...

All man pages Function index File listing

Man pages

calculateThreshold: Calculate PPA significance threshold leading to a desired...
eqtlClassifier: Classifying the eQTLs
eqtlFinder: eqtlFinder
eqtlMcmc: Bayesian Multiple eQTL mapping using MCMC
gene: Gene expression from whole eye tissue from n = 68 BXD RIS...
genepos: Gene position data frame
genotype.liver: A set of 290 SNPs from 60 F2 mice.
hotspotFinder: hotspotFinder
iBMQ-package: iBMQ : An Integrated Hierarchical Bayesian Model for...
map.liver: SNP position data frame
phenotype.liver: Gene expression from liver tissue from n = 60 F2 mice.
PPA.liver: A matrix with Posterior Probabilities of Association
probe.liver: Gene position data frame
snp: A set of 1700 SNP from 68 BXD RIS mice.
snppos: SNP position data frame

Functions

Files

DESCRIPTION
NAMESPACE
R
R/calculateThreshold.R
R/eqtlClassifier.R
R/eqtlFinder.R
R/eqtlMcmc.R
R/hotspotFinder.R
aclocal.m4
build
build/vignette.rds
configure
configure.ac
data
data/PPA.liver.rda
data/datalist
data/gene.rda
data/genepos.rda
data/genotype.liver.rda
data/map.liver.rda
data/phenotype.liver.rda
data/probe.liver.rda
data/snp.rda
data/snppos.rda
data_application_note
data_application_note/data_application_note.R
inst
inst/CITATION
inst/README.txt
inst/doc
inst/doc/iBMQ.R
inst/doc/iBMQ.Rnw
inst/doc/iBMQ.pdf
man
man/PPA.liver.Rd
man/calculateThreshold.Rd
man/eqtlClassifier.Rd
man/eqtlFinder.Rd
man/eqtlMcmc.Rd
man/gene.Rd
man/genepos.Rd
man/genotype.liver.Rd
man/hotspotFinder.Rd
man/iBMQ-package.Rd
man/map.liver.Rd
man/phenotype.liver.Rd
man/probe.liver.Rd
man/snp.Rd
man/snppos.Rd
src
src/ARS.c
src/ARS.h
src/Makevars
src/Makevars.in
src/Makevars.win
src/RngStream.c
src/RngStream.h
src/iBMQ_common.c
src/iBMQ_common.h
src/main_parallel_sparse.c
src/main_parallel_sparse_constC.c
src/norm_gamma_generation.c
src/norm_gamma_generation.h
src/sparse.c
src/sparse.h
vignettes
vignettes/iBMQ.Rnw
iBMQ documentation built on May 20, 2017, 10:16 p.m.

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