genepos: Gene position data frame

In iBMQ: integrated Bayesian Modeling of eQTL data

Description

A data frame specifying the genomic locations of each gene/probe needs to be prepared with the following columns: gene name, chromosome number, start location (in base pairs) and the location (in base pairs).

Format

A data frame with 1000 observations with the following columns: gene name, chromosome number, start location (in base pairs) and the location (in base pairs).

Source

This example uses data generated by Williams and Lu, as available from the Gene Networkwebsite (genenetwork.com). This dataset comprises the profiles of mRNA abundance in whole eye tissue from n = 68 BXD RIS mice, as measured using Affymetrix M430 2.0 microarrays. To ease calculation and facilitate comparisons, we will use a set of G = 1000 probes

Examples

data(genepos)

iBMQ documentation built on Nov. 8, 2020, 11:04 p.m.