The package offers a function to create DNA barcode sets capable of correcting insertion, deletion, and substitution errors. Existing barcodes can be analysed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e., assigned to their original reference barcode.
|Author||Tilo Buschmann <firstname.lastname@example.org>|
|Date of publication||None|
|Maintainer||Tilo Buschmann <email@example.com>|
analyse.barcodes: Analyse Sets of Barcode
barcode.set.distances: Calculate distances between each barcode pair of a barcode...
create.dnabarcodes: Create a set of DNA barcodes using one of several heuristic...
create.pool: Create a pool of barcode candidates.
demultiplex: Demultiplex a set of reads.
distance: Calculate distance between two barcodes.
DNABarcodes-package: Create and analyse DNA barcode sets that are capable of error...
mutatedReads: Mock Set of Mutated Reads
supplierSet: Mock Set of DNA Barcodes