mitoODE: Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"

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The package contains the methods to fit a cell-cycle model on cell count data and the code to reproduce the results shown in our paper "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay" by Pau, G., Walter, T., Neumann, B., Heriche, J.-K., Ellenberg, J., & Huber, W., BMC Bioinformatics (2013), 14(1), 308. doi:10.1186/1471-2105-14-308

Author
Gregoire Pau
Date of publication
None
Maintainer
Gregoire Pau <pau.gregoire@gene.com>
License
LGPL
Version
1.12.0

View on Bioconductor

Man pages

figures
Reproduce the results of the mitoODE paper
mitoODE
Dynamical modelling of phenotypes in a genome-wide RNAi...
plotfit
Plot fitted values

Files in this package

mitoODE/DESCRIPTION
mitoODE/NAMESPACE
mitoODE/NEWS
mitoODE/R
mitoODE/R/fit.R
mitoODE/R/model.R
mitoODE/R/paper.R
mitoODE/R/screen.R
mitoODE/build
mitoODE/build/vignette.rds
mitoODE/inst
mitoODE/inst/CITATION
mitoODE/inst/doc
mitoODE/inst/doc/mitoODE-introduction.R
mitoODE/inst/doc/mitoODE-introduction.Rnw
mitoODE/inst/doc/mitoODE-introduction.pdf
mitoODE/man
mitoODE/man/figures.Rd
mitoODE/man/mitoODE.Rd
mitoODE/man/plotfit.Rd
mitoODE/src
mitoODE/src/rksolve.c
mitoODE/vignettes
mitoODE/vignettes/mitoODE-introduction.Rnw
mitoODE/vignettes/model.pdf