mitoODE: Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"

The package contains the methods to fit a cell-cycle model on cell count data and the code to reproduce the results shown in our paper "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay" by Pau, G., Walter, T., Neumann, B., Heriche, J.-K., Ellenberg, J., & Huber, W., BMC Bioinformatics (2013), 14(1), 308. doi:10.1186/1471-2105-14-308

AuthorGregoire Pau
Date of publicationNone
MaintainerGregoire Pau <pau.gregoire@gene.com>
LicenseLGPL
Version1.12.0

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Files in this package

mitoODE/DESCRIPTION
mitoODE/NAMESPACE
mitoODE/NEWS
mitoODE/R
mitoODE/R/fit.R mitoODE/R/model.R mitoODE/R/paper.R mitoODE/R/screen.R
mitoODE/build
mitoODE/build/vignette.rds
mitoODE/inst
mitoODE/inst/CITATION
mitoODE/inst/doc
mitoODE/inst/doc/mitoODE-introduction.R
mitoODE/inst/doc/mitoODE-introduction.Rnw
mitoODE/inst/doc/mitoODE-introduction.pdf
mitoODE/man
mitoODE/man/figures.Rd mitoODE/man/mitoODE.Rd mitoODE/man/plotfit.Rd
mitoODE/src
mitoODE/src/rksolve.c
mitoODE/vignettes
mitoODE/vignettes/mitoODE-introduction.Rnw
mitoODE/vignettes/model.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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