Biocview "ExperimentData"

16S rRNA Sequencing Data from the Human Microbiome Project
A data package containing two flowJo, one diva xml workspace and the associated fcs files as well as three GatingSets for testing the flowWorkspace, openCyto and CytoML packages.
A k-tables approach to integrate multiple Omics-Data
A k-tables approach to integrate multiple Omics-Data
A k-tables approach to integrate multiple Omics-Data
Analysis of tissue-dependent exon usage in humans
ARACNe-inferred gene networks from TCGA tumor datasets
Bin annotation mm10
CellScore Standard Cell Types Expression Dataset [hgu133plus2]
ChIC package data
ChIC package data
Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication
Copy Neutral Illumina Methylation Arrays
Data accompanying qPLEXanalyzer package
Data accompanying the DAPAR and Prostar packages
Data accompanying the pRoloc package
Data for Combination Connectivity Mapping (ccmap) Package
Data for TCGAbiolinks package
Data for TCGA Workflow
Data for the Harman package
Data for the VariantTools tutorial
Data package for JASPAR 2016
Data package for JASPAR 2018
Data package of high-dimensional cytometry data sets in SummarizedExperiment and flowSet formats
Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.
Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.
Download datasets from EMBL-EBI Expression Atlas
Download datasets from EMBL-EBI Expression Atlas
Download datasets from EMBL-EBI Expression Atlas
Download datasets from EMBL-EBI Expression Atlas
"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis
Example ChIA-PET Datasets for the diffloop Package
Example data for the `artemis` package
Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data
Example data for the `sleuth` package
Example Files for the topdownr R Package
Example GC-MS data for TargetSearch Package
Example metadata for the "restfulSE" R package
Example of 1D NMR spectra data for ASICS package
Experimental Data Package for plethy
Exploring, analyzing and visualizing functions utilizing the pcxnData package
Exploring, analyzing and visualizing functions utilizing the pcxnData package
Exposures, Gene Expression and Methylation data for ilustration purpouses
Exposures, Gene Expression and Methylation data for ilustration purpouses
Exposures, Gene Expression and Methylation data for ilustration purpouses
Gene Expression Datasets for the 'MM2S' Package
Gene set collections for the GIGSEA package
GEO accession data GSE62944 as a SummarizedExperiment
GEO accession data GSE71585 as a SingleCellExperiment
Illumina 450k data on sorted cord blood cells
Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells
Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"
Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"
Linear Model decomposition for Designed Multivariate Experiments
Linear Model decomposition for Designed Multivariate Experiments
Metabolite-set data collection for pathway analysis in metabolomics
MIGSA vignette data
NestLink
Pathway correlation coefficients and p values between pre-defined gene sets
Pathway fingerprint vectors representing a subsection of arrays from the GEO data repository
Position and normalized expression of Fantom's enhancers
Position and normalized expression of Fantom's enhancers
Position and normalized expression of Fantom's TSS
Pre-computed model matrices used by recountNNLS for tx abundance estimate
Pre-processed data for use with the CellMapper package
Primary Blood Cancer Encyclopedia (PACE)
Processed BigWigs from BrainSpan for examples
Processed Hi-C from a variety of pre-processing platforms
Prostate Cancer Data
Prostate Cancer Data
Prostate Cancer Data
Prostate Cancer Data
Prostate Cancer Data
provides database to the AnimalGene2QTL package (Title Case)
Provides FACS Sorted Blood Cell Type DNA Methylation Reference Data to Estimate Blood Cellular Composition
Provides FACS Sorted Blood Cell Type DNA Methylation Reference Data to Estimate Blood Cellular Composition
QDNAseq bin annotation for hg19
Reproduce figures and simulations of OPWeight
Reproduce figures and simulations of OPWeight
Reproduce figures in IHW paper
Reproduce figures in IHW paper
Retrieves data from IMPC database
Retrieves data from IMPC database
RGMQLlib, java libraries to run GMQL scala API
RGMQLlib, java libraries to run GMQL scala API
RGMQLlib, java libraries to run GMQL scala API
Selected Single Cell RNA-seq datasets - due to Deng et al (2014), Jaitin et al (2014) and Zeisel et al (2015)
Strand-seq data for demonstration purposes
Strand-seq data for demonstration purposes
SuperCurve RPPA Sample Data
Supporting Data for SeSAMe Package
Synthetic Expression Data for Gene Regulatory Network Inference
Test dataset for RMassBank
Timer Quantification
Transcriptomic Breast Cancer Datasets
Transcriptomic Ovarian Cancer Datasets
Transcriptomic Pancreatic Cancer Datasets
TWGBS and RNA-seq data from tissue T regulatory cells from mice
VirtUaL ChIP-Seq data Analysis using Networks, dummy dataset
waveTiling Example Data