Biocview "ExperimentData"

10x And SmartSeq2 Data From The Tabula Muris Consortium
16S rRNA Sequencing Data from the Human Microbiome Project
16s rRNA sequencing data from the Human Microbiome Project 2
16s rRNA sequencing data from the Human Microbiome Project 2
Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor
A Curated Microarrays Dataset of MDI-induced Differentiated Adipocytes (3T3-L1) Under Genetic and Pharmacological Perturbations
A data package containing two flowJo, one diva xml workspace and the associated fcs files as well as three GatingSets for testing the flowWorkspace, openCyto and CytoML packages.
A k-tables approach to integrate multiple Omics-Data
A k-tables approach to integrate multiple Omics-Data
Analysis of tissue-dependent exon usage in humans
ARACNe-inferred gene networks from TCGA tumor datasets
Bin annotation mm10
Bulk and single-cell RNA-seq data from the Tabula Muris Senis project
Cancer Dependency Map Data Package
CellScore Standard Cell Types Expression Dataset [hgu133plus2]
ChIC package data
ChIC package data
Collection of Bulk RNA-Seq Experiments With Many Replicates
Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats
Collection Of Human And Mouse TF Regulons
Collection Of Human And Mouse TF Regulons
Collection Of Human And Mouse TF Regulons
Collection of Public Single-Cell RNA-Seq Datasets
Collection of Public Single-Cell RNA-Seq Datasets
Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication
Copy Neutral Illumina Methylation Arrays
Curation of exsiting 42 tuberculosis transcriptomic studies
Data accompanying qPLEXanalyzer package
Data accompanying the DAPAR and Prostar packages
Data accompanying the pRoloc package
Data and Benchmarking Results from Korthauer and Kimes et al. (2019)
Data, Clustering Results and Visualization Functions From Duò et al (2018)
Data for Combination Connectivity Mapping (ccmap) Package
Data for SCATE (Single-cell ATAC-seq Signal Extraction and Enhancement)
Data for screening-network Cox methods for survival analysis
Data for TCGAbiolinks package
Data for TCGA Workflow
Data for the Harman package
Data for the VariantTools tutorial
Data Package for Biscuiteer
Data package for JASPAR 2016
Data Package For Moma Vignette
Data package for phylogenetic profile analysis using PhyloProfile tool
Data package for phylogenetic profile analysis using PhyloProfile tool
Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.
Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.
Datasets for signatureSearch package
Datasets for signatureSearch package
Demo gene expression datasets for SBGNview package
Download datasets from EMBL-EBI Expression Atlas
Download datasets from EMBL-EBI Expression Atlas
Download datasets from EMBL-EBI Expression Atlas
"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis
Example ChIA-PET Datasets for the diffloop Package
Example data for the `artemis` package
Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data
Example data for the RNAmodR package
Example data for the `sleuth` package
Example Files for the topdownr R Package
Example GC-MS data for TargetSearch Package
Example metadata for the "restfulSE" R package
Example of 1D NMR spectra data for ASICS package
Experimental Data Package for plethy
Experimental dataset from the rat BodyMap project
Exploring, analyzing and visualizing functions utilizing the pcxnData package
Exploring, analyzing and visualizing functions utilizing the pcxnData package
Exposures, Gene Expression and Methylation data for ilustration purpouses
Exposures, Gene Expression and Methylation data for ilustration purpouses
Exposures, Gene Expression and Methylation data for ilustration purpouses
FIA-HRMS plasma dataset
Gene Expression Datasets for the 'MM2S' Package
Gene set collections for the GIGSEA package
GEO accession data GSE62944 as a SummarizedExperiment
GEO accession data GSE71585 as a SingleCellExperiment
IDentifying Optimal DNA methylation Libraries (IDOL)
Illumina 450k/EPIC data on FACS and MACS umbilical blood cells
Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells
Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"
Integrating Multi-modal Single Cell Experiment datasets
leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009
Linear Model decomposition for Designed Multivariate Experiments
Mappability tracks of Whole-genome Sequencing from the ENCODE Project
Metabolite-set data collection for pathway analysis in metabolomics
Metabolomics data sets to demonstrate functionality of the qcrms package
MIGSA vignette data
Mouse nanotube CAGE data
Multi-sample multi-group scRNA-seq data
NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles
Omics-Based Interaction Framework
Pathway correlation coefficients and p values between pre-defined gene sets
Pathway fingerprint vectors representing a subsection of arrays from the GEO data repository
PBMC data from 10X Genomics
Position and normalized expression of Fantom's enhancers
Position and normalized expression of Fantom's enhancers
Position and normalized expression of Fantom's TSS
Pre-computed model matrices used by recountNNLS for tx abundance estimate
Pre-processed data for use with the CellMapper package
Processed BigWigs from BrainSpan for examples
Processed Hi-C from a variety of pre-processing platforms
Prostate Cancer Data
Prostate Cancer Data
Prostate Cancer Data
Prostate Cancer Data
Prostate Cancer Data
provides database to the AnimalGene2QTL package (Title Case)
Provides FACS Sorted Blood Cell Type DNA Methylation Reference Data to Estimate Blood Cellular Composition
Provides FACS Sorted Blood Cell Type DNA Methylation Reference Data to Estimate Blood Cellular Composition
QDNAseq bin annotation for hg19
Raw ground spectra recorded on Thermo Fisher Scientific mass spectrometers
Reference data for GenomicDistributions package
Reference Index for Cell Types
Reference Index for Cell Types
Reproduce figures and simulations of OPWeight
Reproduce figures and simulations of OPWeight
Reproduce figures in IHW paper
Reproduce figures in IHW paper
Retrieves data from IMPC database
RGMQLlib, java libraries to run GMQL scala API
RGMQLlib, java libraries to run GMQL scala API
RGMQLlib, java libraries to run GMQL scala API
RNASeqRData: sample data for RNASeqR software package demonstration
RNASeqRData: sample data for RNASeqR software package demonstration
RNA-Seq Tutorial
SCATE: Single-cell ATAC-seq Signal Extraction and Enhancement
Selected Single Cell RNA-seq datasets - due to Deng et al (2014), Jaitin et al (2014) and Zeisel et al (2015)
Single cell dataset from 10x in BUS format
Single-Cell Spatial Data
Single-Cell Transcriptomics Data across Mouse Gastrulation and Early Organogenesis
SQANTI Explorer
Strand-seq data for demonstration purposes
Strand-seq data for demonstration purposes
SuperCurve RPPA Sample Data
Supporting Data for SeSAMe Package
Supporting Data for the MTseeker Package
Synthetic Expression Data for Gene Regulatory Network Inference
Test dataset for RMassBank
Test Files for Single-Cell Droplet Utilities
The package contains examples of single cell data used in vignettes and examples of the scTHI package; data contain both tumor cells and immune cells from public dataset of glioma
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics
Transcriptomic Breast Cancer Datasets
Transcriptomic Ovarian Cancer Datasets
Transcriptomic Pancreatic Cancer Datasets
Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects
TWGBS and RNA-seq data from tissue T regulatory cells from mice
VirtUaL ChIP-Seq data Analysis using Networks, dummy dataset
waveTiling Example Data