ebi-gene-expression-group/bioconductor-ExpressionAtlas: Download datasets from EMBL-EBI Expression Atlas

This package is for searching for datasets in EMBL-EBI Expression Atlas, and downloading them into R for further analysis. Each Expression Atlas dataset is represented as a SimpleList object with one element per platform. Sequencing data is contained in a SummarizedExperiment object, while microarray data is contained in an ExpressionSet or MAList object.

Getting started

Package details

AuthorMaria Keays
Bioconductor views ArrayExpress ExperimentData ExpressionData MicroarrayData SequencingData
MaintainerSuhaib Mohammed <suhaib@ebi.ac.uk>
LicenseGPL (>= 3)
Version1.9.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("ebi-gene-expression-group/bioconductor-ExpressionAtlas")
ebi-gene-expression-group/bioconductor-ExpressionAtlas documentation built on May 23, 2019, 7:03 p.m.