ebi-gene-expression-group/bioconductor-ExpressionAtlas: Download datasets from EMBL-EBI Expression Atlas

This package is for searching for datasets in EMBL-EBI Expression Atlas, and downloading them into R for further analysis. Each Expression Atlas dataset is represented as a SimpleList object with one element per platform. Sequencing data is contained in a SummarizedExperiment object, while microarray data is contained in an ExpressionSet or MAList object.

Getting started

Package details

Bioconductor views ArrayExpress ExperimentData ExpressionData MicroarrayData SequencingData
LicenseGPL (>= 3)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
ebi-gene-expression-group/bioconductor-ExpressionAtlas documentation built on Nov. 5, 2022, 4:21 a.m.