Biocview "SequencingData"

16S rRNA Sequencing Data from the Human Microbiome Project

16s rRNA sequencing data from the Human Microbiome Project 2

A Collection of Single-cell ATAC Sequencing Datasets and Corresponding Metadata

A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata

An ExperimentHub package for accessing processed RLSuite data sets

Clinical datasets from The Cancer Genome Atlas Project from 2016-01-28

Collection of Bulk RNA-Seq Experiments With Many Replicates

Collection of Public Single-Cell RNA-Seq Datasets

Data accompanying the RIC package

Data and Files for the AssessORF Package

Data for the chipseqDB Workflow

Data for the VariantTools tutorial

Data from the 10X 1.3 Million Brain Cell Study

Data package with miRNA-seq datasets from miRmine database as RangedSummarizedExperiment

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Datasets for benchmarking in microbiome research

Datasets for the nullranges package

Data supporting the SingleMoleculeFootprinting pkg

Download datasets from EMBL-EBI Expression Atlas

Example ChIA-PET Datasets for the diffloop Package

Example data for the RNAmodR package

Example metadata for the "restfulSE" R package

Experimental dataset from the rat BodyMap project

Experiment Hub based microbiome datasets

ExperimentHub datasets for the nullranges package

External data sets for clustifyr in ExperimentHub

Index of Reference Cell Type Datasets

leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009

Mappability tracks of Whole-genome Sequencing from the ENCODE Project

Mouse nanotube CAGE data

NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

Open Cancer TherApeutic Discovery (OCTAD) database

Pathway fingerprint vectors representing a subsection of arrays from the GEO data repository

PBMC data from 10X Genomics

Processed Hi-C from a variety of pre-processing platforms

RNASeq datasets from The Cancer Genome Atlas Project from 2016-01-28

Sample Data for MMAPPR2

SCATE: Single-cell ATAC-seq Signal Extraction and Enhancement

Selected Single Cell RNA-seq datasets - due to Deng et al (2014), Jaitin et al (2014) and Zeisel et al (2015)

Single cell dataset from 10x in BUS format

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Spatial allelic expression counts for fly cross embryo

spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data

Strand-seq data for demonstration purposes

Test Files for Single-Cell Droplet Utilities

The ewceData package provides reference data required for ewce

This package contains tools and functions for preprocessing microbiome data

Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data

Transcriptomic Pancreatic Cancer Datasets

Tuberculosis Gene Expression Data for Machine Learning

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

TWGBS and RNA-seq data from tissue T regulatory cells from mice

WGSCS Data for Demonstration Purposes

Whole genome bisulfite-sequencing data on sorted blood cell populations from BLUEPRINT

Biocview "SequencingData"

R Package Documentation

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