rujinwang/WGSmapp: Mappability tracks of Whole-genome Sequencing from the ENCODE Project

This package provides whole-genome mappability tracks on human hg19/hg38 assembly. We employed the 100-mers mappability track from the ENCODE Project and computed weighted average of the mappability scores if multiple ENCODE regions overlap with the same bin. “Blacklist” bins, including segmental duplication regions and gaps in reference assembly from telomere, centromere, and/or heterochromatin regions are included. The dataset consists of three assembled .bam files of single-cell whole genome sequencing from 10X for illustration purposes.

Getting started

Package details

AuthorRujin Wang
Bioconductor views DNASeqData ENCODE ExperimentData Genome Homo_sapiens_Data SequencingData SingleCellData
MaintainerRujin Wang <>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
rujinwang/WGSmapp documentation built on April 6, 2020, 12:10 p.m.