ExpressionAtlas: Download datasets from EMBL-EBI Expression Atlas

This package is for searching for datasets in EMBL-EBI Expression Atlas, and downloading them into R for further analysis. Each Expression Atlas dataset is represented as a SimpleList object with one element per platform. Sequencing data is contained in a SummarizedExperiment object, while microarray data is contained in an ExpressionSet or MAList object.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ExpressionAtlas")
AuthorMaria Keays
Bioconductor views ArrayExpress ExperimentData ExpressionData MicroarrayData SequencingData
Date of publicationNone
MaintainerMaria Keays <mkeays@ebi.ac.uk>
LicenseGPL (>= 3)
Version1.2.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/functions.R
build
build/vignette.rds
data
data/allExps.rda
data/atlasRes.rda
data/rnaseqExps.rda
inst
inst/NEWS
inst/doc
inst/doc/ExpressionAtlas.R
inst/doc/ExpressionAtlas.Rmd
inst/doc/ExpressionAtlas.html
man
man/allExps.Rd man/atlasRes.Rd man/getAtlasData.Rd man/getAtlasExperiment.Rd man/rnaseqExps.Rd man/searchAtlasExperiments.Rd
tests
tests/testthat
tests/testthat.R tests/testthat/test_functions.R
vignettes
vignettes/ExpressionAtlas.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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