This package is for searching for datasets in EMBL-EBI Expression Atlas, and downloading them into R for further analysis. Each Expression Atlas dataset is represented as a SimpleList object with one element per platform. Sequencing data is contained in a SummarizedExperiment object, while microarray data is contained in an ExpressionSet or MAList object.
|Date of publication||None|
|Maintainer||Maria Keays <email@example.com>|
|License||GPL (>= 3)|
allExps: A SimpleList containing some dummy Expression Atlas datasets
atlasRes: A DataFrame listing some Expression Atlas experiments
getAtlasData: Download data from multiple Expression Atlas experiments
getAtlasExperiment: Download data for an Expression Atlas experiment
rnaseqExps: A SimpleList containing a dummy RNA-seq Expression Atlas...
searchAtlasExperiments: Search for Expression Atlas experiments