ExpressionAtlas: Download datasets from EMBL-EBI Expression Atlas

This package is for searching for datasets in EMBL-EBI Expression Atlas, and downloading them into R for further analysis. Each Expression Atlas dataset is represented as a SimpleList object with one element per platform. Sequencing data is contained in a SummarizedExperiment object, while microarray data is contained in an ExpressionSet or MAList object.

AuthorMaria Keays
Date of publicationNone
MaintainerMaria Keays <mkeays@ebi.ac.uk>
LicenseGPL (>= 3)
Version1.2.0

View on Bioconductor

Files in this package

ExpressionAtlas/DESCRIPTION
ExpressionAtlas/NAMESPACE
ExpressionAtlas/NEWS
ExpressionAtlas/R
ExpressionAtlas/R/functions.R
ExpressionAtlas/build
ExpressionAtlas/build/vignette.rds
ExpressionAtlas/data
ExpressionAtlas/data/allExps.rda
ExpressionAtlas/data/atlasRes.rda
ExpressionAtlas/data/rnaseqExps.rda
ExpressionAtlas/inst
ExpressionAtlas/inst/NEWS
ExpressionAtlas/inst/doc
ExpressionAtlas/inst/doc/ExpressionAtlas.R
ExpressionAtlas/inst/doc/ExpressionAtlas.Rmd
ExpressionAtlas/inst/doc/ExpressionAtlas.html
ExpressionAtlas/man
ExpressionAtlas/man/allExps.Rd ExpressionAtlas/man/atlasRes.Rd ExpressionAtlas/man/getAtlasData.Rd ExpressionAtlas/man/getAtlasExperiment.Rd ExpressionAtlas/man/rnaseqExps.Rd ExpressionAtlas/man/searchAtlasExperiments.Rd
ExpressionAtlas/tests
ExpressionAtlas/tests/testthat
ExpressionAtlas/tests/testthat.R
ExpressionAtlas/tests/testthat/test_functions.R
ExpressionAtlas/vignettes
ExpressionAtlas/vignettes/ExpressionAtlas.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.