waldronlab/MicrobiomeBenchmarkData: Datasets for benchmarking in microbiome research

The MicrobiomeBenchmarkData package provides functionality to access microbiome datasets suitable for benchmarking. These datasets have some biological truth, which allows to have expected results for comparison. The datasets come from various published sources and are provided as TreeSummarizedExperiment objects. Currently, only datasets suitable for benchmarking of differential abundance methods are alvailable.

Getting started

Package details

Bioconductor views ExperimentData MicrobiomeData ReproducibleResearch
URL https://github.com/waldronlab/MicrobiomeBenchmarkData http://waldronlab.io/MicrobiomeBenchmarkData/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
waldronlab/MicrobiomeBenchmarkData documentation built on June 24, 2022, 2:45 p.m.