getAtlasData: Download data from multiple Expression Atlas experiments

In ebi-gene-expression-group/bioconductor-ExpressionAtlas: Search, download and visualise datasets from EMBL-EBI Expression Atlas and Single-Cell Expression Atlas

Download data from multiple Expression Atlas experiments

Description

This function downloads Expression Atlas experiment summary SimpleList objects based on a vector of ArrayExpress/BioStudies experiment accessions, and returns a list containing these objects.

Usage

    getAtlasData( experimentAccessions )

Arguments

experimentAccessions

Vector of ArrayExpress/BioStudies accessions for experiments to be downloaded.

Value

A list with one entry per experiment summary SimpleList object. Entries are named using the ArrayExpres/BioStudies accession of the respective experiment.

Examples

    # Download some Expression Atlas data into a list.
    myExperimentSummaries <- getAtlasData( 
        c( 
            "E-GEOD-11175", 
            "E-MTAB-3007", 
            "E-GEOD-21070" 
        ) 
    )

ebi-gene-expression-group/bioconductor-ExpressionAtlas documentation built on July 4, 2025, 12:53 a.m.