lmdme: Linear Model decomposition for Designed Multivariate Experiments

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linear ANOVA decomposition of Multivariate Designed Experiments implementation based on limma lmFit. Features: i)Flexible formula type interface, ii) Fast limma based implementation, iii) p-values for each estimated coefficient levels in each factor, iv) F values for factor effects and v) plotting functions for PCA and PLS.

Author
Cristobal Fresno and Elmer A. Fernandez
Date of publication
None
Maintainer
Cristobal Fresno <cfresno@bdmg.com.ar>
License
GPL (>=2)
Version
1.16.0
URLs

View on Bioconductor

Man pages

lmdme-biplot
Plot a 'biplot' of a lmdme object
lmdme-Class
lmdme S4 class: Linear Model decomposition for Designed...
lmdme-decomposition
'decomposition' of lmdme object
lmdme-getters
Getters for lmdme object
lmdme-leverage
'leverage' test of lmdme objects
lmdme-lmdme
High level constructor of lmdme class object
lmdme-loadingplot
'loadingplot' of interaction PCA decomposed lmdme object
lmdme-padjust
'p.adjust' of p-values for Multiple Test Comparison...
lmdme-permutation
'permutation' of the specified lmdme object
lmdme-printshow
'Show', 'Print' or 'Summary' a lmdme object
lmdme-screeplot
Plot a 'screeplot' of a PCA decomposed lmdme object

Files in this package

lmdme/DESCRIPTION
lmdme/NAMESPACE
lmdme/NEWS
lmdme/R
lmdme/R/lmdme-Class.R
lmdme/R/lmdme-biplot.R
lmdme/R/lmdme-decomposition.R
lmdme/R/lmdme-getters.R
lmdme/R/lmdme-leverage.R
lmdme/R/lmdme-lmdme.R
lmdme/R/lmdme-loadingplot.R
lmdme/R/lmdme-padjust.R
lmdme/R/lmdme-permutation.R
lmdme/R/lmdme-printshow.R
lmdme/R/lmdme-screeplot.R
lmdme/build
lmdme/build/vignette.rds
lmdme/inst
lmdme/inst/CITATION
lmdme/inst/doc
lmdme/inst/doc/lmdme-vignette.R
lmdme/inst/doc/lmdme-vignette.Rnw
lmdme/inst/doc/lmdme-vignette.pdf
lmdme/man
lmdme/man/lmdme-Class.Rd
lmdme/man/lmdme-biplot.Rd
lmdme/man/lmdme-decomposition.Rd
lmdme/man/lmdme-getters.Rd
lmdme/man/lmdme-leverage.Rd
lmdme/man/lmdme-lmdme.Rd
lmdme/man/lmdme-loadingplot.Rd
lmdme/man/lmdme-padjust.Rd
lmdme/man/lmdme-permutation.Rd
lmdme/man/lmdme-printshow.Rd
lmdme/man/lmdme-screeplot.Rd
lmdme/vignettes
lmdme/vignettes/jss.dtx
lmdme/vignettes/lmdme-vignette.Rnw
lmdme/vignettes/lmdme-vignette.bib
lmdme/vignettes/microarray.pdf
lmdme/vignettes/ts1aer.fd
lmdme/vignettes/ts1aett.fd