lmdme: Linear Model decomposition for Designed Multivariate Experiments

linear ANOVA decomposition of Multivariate Designed Experiments implementation based on limma lmFit. Features: i)Flexible formula type interface, ii) Fast limma based implementation, iii) p-values for each estimated coefficient levels in each factor, iv) F values for factor effects and v) plotting functions for PCA and PLS.

AuthorCristobal Fresno and Elmer A. Fernandez
Date of publicationNone
MaintainerCristobal Fresno <cfresno@bdmg.com.ar>
LicenseGPL (>=2)
Version1.16.0
http://www.bdmg.com.ar/?page_id=38

View on Bioconductor

Functions

biplot Man page
biplot,lmdme-method Man page
coef Man page
coefficients Man page
coefficients,lmdme-method Man page
coef,lmdme-method Man page
components Man page
components,lmdme-method Man page
components-methods Man page
componentsType Man page
componentsType,lmdme-method Man page
componentsType-methods Man page
decomposition Man page
decomposition,lmdme-method Man page
decomposition-methods Man page
design Man page
design,lmdme-method Man page
design-methods Man page
fitted Man page
fitted,lmdme-method Man page
fitted.values Man page
fitted.values,lmdme-method Man page
F.p.values Man page
F.p.values,lmdme-method Man page
F.p.values-methods Man page
leverage Man page
leverage,lmdme-method Man page
leverage-methods Man page
lmdme Man page
lmdme-class Man page
lmdme,formula,ANY,data.frame-method Man page
lmdme-methods Man page
lmdme-padjust Man page
loadingplot Man page
loadingplot,lmdme-method Man page
model Man page
modelDecomposition Man page
modelDecomposition,lmdme-method Man page
modelDecomposition-methods Man page
model,lmdme-method Man page
model-methods Man page
p.adjust Man page
p.adjust,ANY-method Man page
p.adjust,lmdme-method Man page
p.adjust-methods Man page
permutation Man page
permutation,formula,data.frame,data.frame-method Man page
permutation-methods Man page
print Man page
print,lmdme-method Man page
p.values Man page
p.values,lmdme-method Man page
p.values-methods Man page
resid Man page
resid,lmdme-method Man page
residuals Man page
residuals,lmdme-method Man page
screeplot Man page
screeplot,lmdme-method Man page
show Man page
show,lmdme-method Man page
summary Man page
summary,lmdme-method Man page

Files

lmdme/DESCRIPTION
lmdme/NAMESPACE
lmdme/NEWS
lmdme/R
lmdme/R/lmdme-Class.R lmdme/R/lmdme-biplot.R lmdme/R/lmdme-decomposition.R lmdme/R/lmdme-getters.R lmdme/R/lmdme-leverage.R lmdme/R/lmdme-lmdme.R lmdme/R/lmdme-loadingplot.R lmdme/R/lmdme-padjust.R lmdme/R/lmdme-permutation.R lmdme/R/lmdme-printshow.R lmdme/R/lmdme-screeplot.R
lmdme/build
lmdme/build/vignette.rds
lmdme/inst
lmdme/inst/CITATION
lmdme/inst/doc
lmdme/inst/doc/lmdme-vignette.R
lmdme/inst/doc/lmdme-vignette.Rnw
lmdme/inst/doc/lmdme-vignette.pdf
lmdme/man
lmdme/man/lmdme-Class.Rd lmdme/man/lmdme-biplot.Rd lmdme/man/lmdme-decomposition.Rd lmdme/man/lmdme-getters.Rd lmdme/man/lmdme-leverage.Rd lmdme/man/lmdme-lmdme.Rd lmdme/man/lmdme-loadingplot.Rd lmdme/man/lmdme-padjust.Rd lmdme/man/lmdme-permutation.Rd lmdme/man/lmdme-printshow.Rd lmdme/man/lmdme-screeplot.Rd
lmdme/vignettes
lmdme/vignettes/jss.dtx
lmdme/vignettes/lmdme-vignette.Rnw
lmdme/vignettes/lmdme-vignette.bib
lmdme/vignettes/microarray.pdf
lmdme/vignettes/ts1aer.fd
lmdme/vignettes/ts1aett.fd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.