lmdme: Linear Model decomposition for Designed Multivariate Experiments
Version 1.18.0

linear ANOVA decomposition of Multivariate Designed Experiments implementation based on limma lmFit. Features: i)Flexible formula type interface, ii) Fast limma based implementation, iii) p-values for each estimated coefficient levels in each factor, iv) F values for factor effects and v) plotting functions for PCA and PLS.

Browse man pages Browse package API and functions Browse package files

AuthorCristobal Fresno and Elmer A. Fernandez
Bioconductor views Cancer DifferentialExpression ExperimentData Microarray OneChannel TwoChannel Visualization
Date of publicationNone
MaintainerCristobal Fresno <cfresno@bdmg.com.ar>
LicenseGPL (>=2)
Version1.18.0
URL http://www.bdmg.com.ar/?page_id=38
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("lmdme")

Man pages

lmdme-biplot: Plot a 'biplot' of a lmdme object
lmdme-Class: lmdme S4 class: Linear Model decomposition for Designed...
lmdme-decomposition: 'decomposition' of lmdme object
lmdme-getters: Getters for lmdme object
lmdme-leverage: 'leverage' test of lmdme objects
lmdme-lmdme: High level constructor of lmdme class object
lmdme-loadingplot: 'loadingplot' of interaction PCA decomposed lmdme object
lmdme-padjust: 'p.adjust' of p-values for Multiple Test Comparison...
lmdme-permutation: 'permutation' of the specified lmdme object
lmdme-printshow: 'Show', 'Print' or 'Summary' a lmdme object
lmdme-screeplot: Plot a 'screeplot' of a PCA decomposed lmdme object

Functions

F.p.values Man page
F.p.values,lmdme-method Man page
F.p.values-methods Man page
biplot Man page
biplot,lmdme-method Man page
coef Man page
coef,lmdme-method Man page
coefficients Man page
coefficients,lmdme-method Man page
components Man page
components,lmdme-method Man page
components-methods Man page
componentsType Man page
componentsType,lmdme-method Man page
componentsType-methods Man page
decomposition Man page
decomposition,lmdme-method Man page
decomposition-methods Man page
design Man page
design,lmdme-method Man page
design-methods Man page
fitted Man page
fitted,lmdme-method Man page
fitted.values Man page
fitted.values,lmdme-method Man page
leverage Man page
leverage,lmdme-method Man page
leverage-methods Man page
lmdme Man page
lmdme,formula,ANY,data.frame-method Man page
lmdme-class Man page
lmdme-methods Man page
lmdme-padjust Man page
loadingplot Man page
loadingplot,lmdme-method Man page
model Man page
model,lmdme-method Man page
model-methods Man page
modelDecomposition Man page
modelDecomposition,lmdme-method Man page
modelDecomposition-methods Man page
p.adjust Man page
p.adjust,ANY-method Man page
p.adjust,lmdme-method Man page
p.adjust-methods Man page
p.values Man page
p.values,lmdme-method Man page
p.values-methods Man page
permutation Man page
permutation,formula,data.frame,data.frame-method Man page
permutation-methods Man page
print Man page
print,lmdme-method Man page
resid Man page
resid,lmdme-method Man page
residuals Man page
residuals,lmdme-method Man page
screeplot Man page
screeplot,lmdme-method Man page
show Man page
show,lmdme-method Man page
summary Man page
summary,lmdme-method Man page

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/lmdme-Class.R
R/lmdme-biplot.R
R/lmdme-decomposition.R
R/lmdme-getters.R
R/lmdme-leverage.R
R/lmdme-lmdme.R
R/lmdme-loadingplot.R
R/lmdme-padjust.R
R/lmdme-permutation.R
R/lmdme-printshow.R
R/lmdme-screeplot.R
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/lmdme-vignette.R
inst/doc/lmdme-vignette.Rnw
inst/doc/lmdme-vignette.pdf
man
man/lmdme-Class.Rd
man/lmdme-biplot.Rd
man/lmdme-decomposition.Rd
man/lmdme-getters.Rd
man/lmdme-leverage.Rd
man/lmdme-lmdme.Rd
man/lmdme-loadingplot.Rd
man/lmdme-padjust.Rd
man/lmdme-permutation.Rd
man/lmdme-printshow.Rd
man/lmdme-screeplot.Rd
vignettes
vignettes/jss.dtx
vignettes/lmdme-vignette.Rnw
vignettes/lmdme-vignette.bib
vignettes/microarray.pdf
vignettes/ts1aer.fd
vignettes/ts1aett.fd
lmdme documentation built on May 20, 2017, 10:48 p.m.