hidelab/pcxn: Exploring, analyzing and visualizing functions utilizing the pcxnData package

Discover the correlated pathways/gene sets of a single pathway/gene set or discover correlation relationships among multiple pathways/gene sets. Draw a heatmap or create a network of your query and extract members of each pathway/gene set found in the available collections (MSigDB H hallmark, MSigDB C2 Canonical pathways, MSigDB C5 GO BP and Pathprint).

Getting started

Package details

AuthorSokratis Kariotis, Yered Pita-Juarez, Winston Hide, Wenbin Wei
Bioconductor views ExperimentData ExpressionData GEO Homo_sapiens_Data MicroarrayData OneChannelData PathwayInteractionDatabase
MaintainerSokratis Kariotis <s.kariotis@sheffield.ac.uk>
LicenseMIT + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
hidelab/pcxn documentation built on May 21, 2019, 3:03 a.m.