datapplab/ Supporting datasets for SBGNview package

This package contains: 1. A microarray gene expression dataset from a human breast cancer study. 2. A RNA-Seq gene expression dataset from a mouse study on IFNG knockout. 3. ID mapping tables between gene IDs and SBGN-ML file glyph IDs. 4. Percent of orthologs detected in other species of the genes in a pathway. Cutoffs of this percentage for defining if a pathway exists in another species. 5. XML text of SBGN-ML files for all pre-collected pathways.

Getting started

Package details

Author Xiaoxi Dong*, Kovidh Vegesna*, Weijun Luo
Bioconductor views BreastCancerData CancerData ExperimentData GEO MicroarrayData RNASeqData
MaintainerWeijun Luo <>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
datapplab/ documentation built on March 3, 2021, 7:34 p.m.