datapplab/SBGNview.data: Demo gene expression datasets for SBGNview package

This package contains: 1. A microarray gene expression dataset from a human breast cancer study. 2. A RNA-Seq gene expression dataset from a mouse study on IFNG knockout. 3. ID mapping tables between gene IDs and SBGN-ML file glyph IDs. 4. Percent of orthologs detected in other species of the genes in a pathway. Cutoffs of this percentage for defining if a pathway exists in another species. 5. XML text of SBGN-ML files for all pre-collected pathways.

Getting started

Package details

Author Xiaoxi Dong, Weijun Luo
Bioconductor views BreastCancerData CancerData ExperimentData GEO MicroarrayData RNASeqData
MaintainerXiaoxi Dong <[email protected]>
LicenseAGPL-3
Version0.99.18
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("datapplab/SBGNview.data")
datapplab/SBGNview.data documentation built on June 13, 2019, 2:05 p.m.