BodenmillerGroup/imcdatasets: Collection of publicly available imaging mass cytometry (IMC) datasets

The imcdatasets package provides access to publicly available IMC datasets. IMC is a technology that enables measurement of > 40 proteins from tissue sections. The generated images can be segmented to extract single cell data. Datasets typically consist of three elements: a SingleCellExperiment object containing single cell data, a CytoImageList object containing multichannel images and a CytoImageList object containing the cell masks that were used to extract the single cell data from the images.

Getting started

Package details

Bioconductor views ExperimentHub PackageTypeData SingleCellData TechnologyData Tissue
Maintainer
LicenseGPL-3
Version1.5.0
URL https://github.com/BodenmillerGroup/imcdatasets
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("BodenmillerGroup/imcdatasets")
BodenmillerGroup/imcdatasets documentation built on June 28, 2022, 8:34 p.m.