BodenmillerGroup/imcdatasets: Collection of publicly available imaging mass cytometry (IMC) datasets

The imcdatasets package provides access to publicly available IMC datasets. IMC is a technology that enables measurement of > 40 proteins from tissue sections. The generated images can be segmented to extract single cell data. Datasets typically consist of three elements: a SingleCellExperiment object containing single cell data, a CytoImageList object containing multichannel images and a CytoImageList object containing the cell masks that were used to extract the single cell data from the images.

Getting started

Package details

Bioconductor views ExperimentData ExperimentHub Homo_sapiens_Data ImmunoOncologyData PackageTypeData ReproducibleResearch SingleCellData SpatialData TechnologyData Tissue
LicenseGPL-3 + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
BodenmillerGroup/imcdatasets documentation built on March 20, 2024, 9:24 a.m.