listDatasets: List all available datasets

In BodenmillerGroup/imcdatasets: Collection of publicly available imaging mass cytometry (IMC) datasets

List all available datasets

Description

Summary information for all available datasets in the imcdatasets package.

Usage

listDatasets()

Details

Each dataset contains single-cell data, multichannel images and cell segmentation masks.

Value

A DataFrame where each row corresponds to a dataset, containing the fields:

• FunctionCall, the R function call required to construct the dataset.

• Species, species of origin.

• Tissue, the tissue that was imaged.

• NumberOfCells, the total number of cells in the dataset.

• NumberOfImages, the total number of images in the dataset.

• NumberOfChannels, the number of channels per image.

• Reference, a Markdown-formatted citation to scripts/ref.bib in the imcdatasets installation directory.

Examples

listDatasets()

BodenmillerGroup/imcdatasets documentation built on March 20, 2024, 9:24 a.m.