Biocview "ExperimentHub"

16S rRNA Sequencing Data from the Human Microbiome Project
Access and Analyze DNA Methylation Array Databases
Access and analyze DNA methylation database compilations
Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor
A Curated Microarrays Dataset of MDI-induced Differentiated Adipocytes (3T3-L1) Under Genetic and Pharmacological Perturbations
An ExperimentHub Package for the Molecular Signatures Database (MSigDB)
An ExperimentHub Package for the Molecular Signatures Database (MSigDB)
Bulk and single-cell RNA-seq data from the Tabula Muris Senis project
Cancer Dependency Map Data Package
Collection of Bulk RNA-Seq Experiments With Many Replicates
Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats
Collection of publicly available imaging mass cytometry (IMC) datasets
Collection of Public Single-Cell RNA-Seq Datasets
Collection of Public Single-Cell RNA-Seq Datasets
Collection of spatially resolved transcriptomics datasets in SpatialExperiment Bioconductor format
Collection of spatially resolved transcriptomics datasets in SpatialExperiment Bioconductor format
Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
Curated Metagenomic Data of the Human Microbiome
Curated Metagenomic Data of the Human Microbiome
Curation of exsiting 42 tuberculosis transcriptomic studies
Data and Benchmarking Results from Korthauer and Kimes et al. (2019)
Data for methylclock package
Data for SCATE (Single-cell ATAC-seq Signal Extraction and Enhancement)
Data for the chipseqDB Workflow
Data Package for Biscuiteer
Data package for phylogenetic profile analysis using PhyloProfile tool
Data package for phylogenetic profile analysis using PhyloProfile tool
Datasets for signatureSearch package
Datasets for signatureSearch package
Experimental dataset from the rat BodyMap project
Experiment Hub based microbiome datasets
External data sets for clustifyr
External data sets for clustifyr in ExperimentHub
Illumina 450k/EPIC data on FACS and MACS umbilical blood cells
Illumina EPIC data on BeadSorted adult saliva cells
Integrating Multi-modal Single Cell Experiment datasets
Metabolomics data sets to demonstrate functionality of the qcrms package
Multi-sample multi-group scRNA-seq data
NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles
PBMC data from 10X Genomics
Pre-trained random forest models obtained using preciseTAD
Pre-trained random forest models obtained using preciseTAD
pwrEWAS.data: Reference data accompanying pwrEWAS
Raw ground spectra recorded on Thermo Fisher Scientific mass spectrometers
Reference data for GenomicDistributions package
Reference Index for Cell Types
Reference Index for Cell Types
SCATE: Single-cell ATAC-seq Signal Extraction and Enhancement
SCATE: Single-cell ATAC-seq Signal Extraction and Enhancement
Single cell dataset from 10x in BUS format
Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis
Single-Cell Proteomics Data Package
Single-Cell Spatial Data
Single-cell Transcriptomics Data of the Ageing Mouse Thymus
spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data
Supporting Data for SeSAMe Package
Test datasets for the MACSr package
Test Files for Single-Cell Droplet Utilities
The ewceData package provides reference data required for ewce
Transcriptomic Breast Cancer Datasets
Transcriptomic Ovarian Cancer Datasets
Transcriptomic Pancreatic Cancer Datasets
Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects
Whole genome bisulfite-sequencing data on sorted blood cell populations from BLUEPRINT
Whole genome bisulfite-sequencing data on sorted blood cell populations from BLUEPRINT