Biocview "ExperimentHub"

16S rRNA Sequencing Data from the Human Microbiome Project
Access and Analyze DNA Methylation Array Databases
Access and analyze public DNA methylation array data compilations
Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor
A Curated Microarrays Dataset of MDI-induced Differentiated Adipocytes (3T3-L1) Under Genetic and Pharmacological Perturbations
An ExperimentHub package for accessing processed RLSuite data sets
An ExperimentHub Package for data sets with an Epithelial to Mesenchymal Transition (EMT)
An ExperimentHub Package for the Molecular Signatures Database (MSigDB)
An ExperimentHub Package for the Molecular Signatures Database (MSigDB)
Brain Data from Allen Institute Brain Atlas
Bulk and single-cell RNA-seq data from the Tabula Muris Senis project
Cancer Dependency Map Data Package
Collection of Bulk RNA-Seq Experiments With Many Replicates
Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats
Collection of publicly available imaging mass cytometry (IMC) datasets
Collection of public MERFISH datasets
Collection of Public Single-Cell RNA-Seq Datasets
Collection of Public Single-Cell RNA-Seq Datasets
Collection of spatially resolved omics datasets
Collection of spatially-resolved transcriptomics datasets in SpatialExperiment Bioconductor format
Collection of spatially-resolved transcriptomics datasets in SpatialExperiment Bioconductor format
Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
Curated Metagenomic Data of the Human Microbiome
Curated Metagenomic Data of the Human Microbiome
Curation of existing 49 tuberculosis transcriptomic studies
Data and Benchmarking Results from Korthauer and Kimes et al. (2019)
Data for epimutacions package
Data for methylclock package
Data for NxtIRF
Data for SCATE (Single-cell ATAC-seq Signal Extraction and Enhancement)
Data for the chipseqDB Workflow
Data for the EpiMix package
Data Package for Biscuiteer
Data package for phylogenetic profile analysis using PhyloProfile tool
Data package for phylogenetic profile analysis using PhyloProfile tool
data package for xcore
Datasets for signatureSearch package
Datasets for signatureSearch package
Data supporting the SingleMoleculeFootprinting pkg
easier internal data and exemplary dataset from IMvigor210CoreBiologies package
Experimental dataset from the rat BodyMap project
Experiment Hub based microbiome datasets
ExperimentHub datasets for the nullranges package
ExperimentHub datasets for the nullranges package
External data sets for clustifyr
External data sets for clustifyr in ExperimentHub
Illumina 450k/EPIC data on FACS and MACS umbilical blood cells
Illumina EPIC data on BeadSorted child saliva cells
Illumina EPIC data on extended immunomagnetic sorted blood populations
Integrating Multi-modal Single Cell Experiment datasets
Metabolomics data sets to demonstrate functionality of the qcrms package
Multi-sample multi-group scRNA-seq data
NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles
Open Cancer TherApeutic Discovery (OCTAD) database
PBMC data from 10X Genomics
Pre-trained models for the crisprScore package
Pre-trained random forest models obtained using preciseTAD
Pre-trained random forest models obtained using preciseTAD
Provide programmatic access to the tonsil cell atlas datasets
pwrEWAS.data: Reference data accompanying pwrEWAS
Raw ground spectra recorded on Thermo Fisher Scientific mass spectrometers
Reference data for GenomicDistributions package
Reference Index for Cell Types
Reference Index for Cell Types
SCATE: Single-cell ATAC-seq Signal Extraction and Enhancement
SCATE: Single-cell ATAC-seq Signal Extraction and Enhancement
Single cell dataset from 10x in BUS format
Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis
Single-Cell Proteomics Data Package
Single-Cell Spatial Data
Single-cell Transcriptomics Data of the Ageing Mouse Thymus
Spatial allelic expression counts for fly cross embryo
spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data
Supporting Data for SeSAMe Package
Test datasets for the MACSr package
Test Files for Single-Cell Droplet Utilities
The ewceData package provides reference data required for ewce
Transcriptomic Breast Cancer Datasets
Transcriptomic Ovarian Cancer Datasets
Transcriptomic Pancreatic Cancer Datasets
Tuberculosis Gene Expression Data for Machine Learning
Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects
Vectra Polaris and Vectra 3 multiplex single-cell imaging data
Whole genome bisulfite-sequencing data on sorted blood cell populations from BLUEPRINT
Whole genome bisulfite-sequencing data on sorted blood cell populations from BLUEPRINT