alexchwong/NxtIRFdata: Data for NxtIRF

NxtIRFdata is a companion package for NxtIRF, which is an IRFinder- based R package for Intron Retention and Alternative Splicing quantitation for RNA-seq BAM files. NxtIRFdata contains Mappability files required for the generation of human and mouse references. NxtIRFdata also contains a synthetic genome reference and example BAM files used to test NxtIRF. BAM files are based on 6 samples from the Leucegene dataset provided by NCBI Gene Expression Omnibus under accession number GSE67039.

Getting started

Package details

Bioconductor views ExperimentData ExperimentHub ExpressionData Genome PackageTypeData RNASeqData
LicenseMIT + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
alexchwong/NxtIRFdata documentation built on Dec. 19, 2021, 12:32 a.m.