NxtIRFdata is a companion package for NxtIRF, which is an IRFinder- based R package for Intron Retention and Alternative Splicing quantitation for RNA-seq BAM files. NxtIRFdata contains Mappability files required for the generation of human and mouse references. NxtIRFdata also contains a synthetic genome reference and example BAM files used to test NxtIRF. BAM files are based on 6 samples from the Leucegene dataset provided by NCBI Gene Expression Omnibus under accession number GSE67039.
Package details |
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Bioconductor views | ExperimentData ExperimentHub ExpressionData Genome PackageTypeData RNASeqData |
Maintainer | |
License | MIT + file LICENSE |
Version | 0.99.6 |
URL | https://github.com/alexchwong/NxtIRFdata |
Package repository | View on GitHub |
Installation |
Install the latest version of this package by entering the following in R:
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