DavisLaboratory/msigdbR: An ExperimentHub Package for the Molecular Signatures Database (MSigDB)

This package provides the Molecular Signatures Database (MSigDB) in a R accessible objects. Signatures are stored in GeneSet class objects form the GSEABase package and the entire database is stored in a GeneSetCollection object. These data are then hosted on the ExperimentHub. Data used in this package was obtained from the MSigDB of the Broad Institute. Metadata for each gene set is stored along with the gene set in the GeneSet class object.

Getting started

Package details

Bioconductor views ExperimentHub Homo_sapiens_Data Mus_musculus_Data
LicenseCC BY 4.0
URL https://davislaboratory.github.io/msigdb
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
DavisLaboratory/msigdbR documentation built on March 24, 2022, 2:33 p.m.