listSubCollections: List all sub-collection types within a MSigDB gene set...

View source: R/accessMSigDB.R

listSubCollectionsR Documentation

List all sub-collection types within a MSigDB gene set collection

Description

This function lists all the sub-collection types present in a MSigDB gene set collection. Descriptions of sub-collections can be found at the MSigDB website.

Usage

listSubCollections(gsc)

Value

a character vector, containing character codes for all sub-collections present in the GeneSetCollection object.

Examples

gsc = getMsigdb('hs', 'SYM')
listSubCollections(gsc)


DavisLaboratory/msigdbR documentation built on July 27, 2023, 4 p.m.