listCollections: List all collection types within a MSigDB gene set collection

View source: R/accessMSigDB.R

listCollectionsR Documentation

List all collection types within a MSigDB gene set collection

Description

This function lists all the collection types present in a MSigDB gene set collection. Descriptions of collections can be found at the MSigDB website.

Usage

listCollections(gsc)

Value

a character vector, containing character codes for all collections present in the GeneSetCollection object.

Examples

gsc = getMsigdb('hs', 'SYM')
listCollections(gsc)


DavisLaboratory/msigdbR documentation built on July 27, 2023, 4 p.m.