getIMEX: Retrieve IMEx PPI hosted on the hub

In DavisLaboratory/msigdbR: An ExperimentHub Package for the Molecular Signatures Database (MSigDB)

Retrieve IMEx PPI hosted on the hub

Description

Download International Molecular Exchange (IMEx) protein-protein interaction (PPI) hosted on the ExperimentHub or retrieve pre-downloaded version from cache. This package currently hosts versions for human and mouse with both symbol and Entrez identifiers.

Usage

getIMEX(org = c("hs", "mm"), inferred = FALSE, version = getIMEXVersions())

Arguments

org	a character, representing the organism whose PPI database needs to be retrieved ("hs" for human and "mm" for mouse).
inferred	a logical, indicating whether inference from other organisms should be included in the PPI.
version	a character, stating the version of IMEX to be retrieved. See getMsigdbVersions().

Value

a data.frame, containing the IMEx PPI.

Examples

imex = getIMEX("hs")

DavisLaboratory/msigdbR documentation built on July 27, 2023, 4 p.m.