Man pages for DavisLaboratory/msigdbR
An ExperimentHub Package for the Molecular Signatures Database (MSigDB)
| appendKEGG | Add KEGG pathway derived gene sets to a collection |
| getIMEX | Retrieve IMEx PPI hosted on the hub |
| getIMEXVersions | Get IMEX versions included in the msigdb package |
| getMsigdb | Retrieve MSigDB data hosted on the hub |
| getMsigdbIDF | Retrieve MSigDB data hosted on the hub |
| getMsigdbVersions | Get MSigDB versions included in the msigdb package |
| getMsigIdType | Infer gene identifier type for the gene set collection |
| getMsigOrganism | Infer organism type for the gene set collection |
| listCollections | List all collection types within a MSigDB gene set collection |
| listSubCollections | List all sub-collection types within a MSigDB gene set... |
| msigdb | The Molecular Signatures Database (MSigDB) |
| subsetCollection | Subset collections and sub-collections of MSigDB |
