massonix/HCATonsilData: Provide programmatic access to the tonsil cell atlas datasets

This package provides access to the scRNA-seq, scATAC-seq, multiome, CITE-seq and spatial transcriptomics (Visium) data generated by the tonsil cell atlas in the context of the Human Cell Atlas (HCA). The data is provided via the Bioconductor project in the form of SingleCellExperiments. Additionally, information on the whole compendium of identified cell types is provided in form of a glossary.

Getting started

Package details

Bioconductor views ExperimentData ExperimentHub ExpressionData RNASeqData SingleCellData SpatialData
LicenseMIT + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
massonix/HCATonsilData documentation built on May 7, 2024, 8:33 a.m.