listCellTypes: List available cell types for a dataset of the tonsil cell...

In massonix/HCATonsilData: Provide programmatic access to the tonsil cell atlas datasets

List available cell types for a dataset of the tonsil cell atlas

Description

List available cell types for a dataset of the tonsil cell atlas

Usage

listCellTypes(
  assayType = c("RNA", "ATAC", "Multiome", "CITE", "Spatial"),
  version = "2.0"
)

Arguments

assayType	Either 'RNA', 'ATAC', 'Multiome', 'CITE', or 'Spatial'
version	Version of the tonsil atlas data: '1.0' (preprint) or '2.0' or '2.0' (publication, default). Note that, for version 2.0, CD8-T and ILC-NK are combined in a single 'Cytotoxic' object.

Value

A character vector with the available cell types for the indicated dataset.

Examples

listCellTypes(assayType = "RNA", version = "2.0")

massonix/HCATonsilData documentation built on Nov. 1, 2023, 10:33 a.m.