NBC_MBC_annotation_df: Annotation dictionary for naive and memory B cells (NBC-MBC)
In massonix/HCATonsilData: Provide programmatic access to the tonsil cell atlas datasets
NBC_MBC_annotation_df R Documentation
Annotation dictionary for naive and memory B cells (NBC-MBC)
Description
In version 1 of the atlas, we changed the clusters and annotation for NBC-MBC
prior to publishing the preprint. Since, there is not a 1:1 mapping between
clusters, here we provide the correspondence between the annotations in
February 2022 and the preprint (June 2022) for each NBC-MBC cell barcode.
Format
A dataframe with 112478 NBC-MBC and 5 variables
- barcode
cell barcode
- names_level_5_clusters_eta
Cell annotation given by the B-cell annotation team in February 2022
- annotation_20220619
Cell annotation given by the B-cell annotation team June 2022 (preprint)
- UMAP_1
UMAP1 coordinates
- UMAP_2
UMAP2 coordinates
Details
This data is used by the updateAnnotation function in B cells.
Source
massonix/HCATonsilData documentation built on Nov. 1, 2023, 10:33 a.m.
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| NBC_MBC_annotation_df | R Documentation |
Annotation dictionary for naive and memory B cells (NBC-MBC)
Description
In version 1 of the atlas, we changed the clusters and annotation for NBC-MBC prior to publishing the preprint. Since, there is not a 1:1 mapping between clusters, here we provide the correspondence between the annotations in February 2022 and the preprint (June 2022) for each NBC-MBC cell barcode.
Format
A dataframe with 112478 NBC-MBC and 5 variables
- barcode
cell barcode
- names_level_5_clusters_eta
Cell annotation given by the B-cell annotation team in February 2022
- annotation_20220619
Cell annotation given by the B-cell annotation team June 2022 (preprint)
- UMAP_1
UMAP1 coordinates
- UMAP_2
UMAP2 coordinates
Details
This data is used by the updateAnnotation function in B cells.
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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