Files in massonix/HCATonsilData
Provide programmatic access to the tonsil cell atlas datasets
.Rbuildignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/HCATonsilData.R
R/data.R
R/glossary.R
R/listCellTypes.R
R/updateAnnotation.R
README.md
data/NBC_MBC_annotation_df.RData
data/annotations_dictionary.RData
data/colors_20230508.RData
data/donor_metadata.RData
inst/extdata/features.tsv.gz
inst/extdata/metadata-tonsil-atlas-rna-v1.csv
inst/extdata/metadata-tonsil-atlas-rna-v2.csv
inst/extdata/metadata-tonsil-atlas-spatial-v2.csv
inst/extdata/slo_glo_table.xlsx
inst/extdata/sloglo_tabular.csv
inst/images/cd4_t_umap.png
inst/images/cytotoxic_umap.png
inst/images/epithelial_umap.png
inst/images/fdc_umap.png
inst/images/gcbc_umap.png
inst/images/graphical_abstract.png
inst/images/myeloid_umap.png
inst/images/nbc_mbc_umap.png
inst/images/pc_umap.png
inst/images/pdc_umap.png
inst/images/umaps_myeloid.png
inst/scripts/generate_sloglo_table.R
inst/scripts/make-annotation-colors.R
inst/scripts/make-annotation-dictionary.R
inst/scripts/make-data-tonsil-atlas-rna-v1.Rmd
inst/scripts/make-data-tonsil-atlas-rna-v2.Rmd
inst/scripts/make-data-tonsil-atlas-spatial-v2.Rmd
inst/scripts/make-metadata-tonsil-atlas-rna-v1.R
inst/scripts/make-metadata-tonsil-atlas-rna-v2.R
inst/scripts/make-metadata-tonsil-atlas-spatial-v2.R
inst/scripts/tonsil-atlas-rds-files.csv
inst/scripts/tonsil-atlas-zenodo-get-output_v1.csv
inst/scripts/tonsil-atlas-zenodo-get-output_v2.csv
man/HCATonsilData.Rd
man/NBC_MBC_annotation_df.Rd
man/TonsilData_cellinfo.Rd
man/TonsilData_cellinfo_html.Rd
man/TonsilData_glossary.Rd
man/annotations_dictionary.Rd
man/colors_20230508.Rd
man/donor_metadata.Rd
man/listCellTypes.Rd
man/updateAnnotation.Rd
tests/testthat.R
tests/testthat/test-HCATonsilData.R
tests/testthat/test-glossary.R
vignettes/HCATonsilData.Rmd
vignettes/HCATonsilData.bib
vignettes/tfr_glossary.png
vignettes/tonsil_atlas_cohort.png
vignettes/tonsil_atlas_n_detected_genes.png
vignettes/tonsil_atlas_umap_9_compartments.png
vignettes/tonsil_atlas_umap_discovery_validation_cohort.png
vignettes/tonsil_atlas_umap_discovery_validation_cohort_CD4.png
vignettes/tonsil_atlas_umaps.png
