pcxn: Exploring, analyzing and visualizing functions utilizing the pcxnData package

Discover the correlated pathways/gene sets of a single pathway/gene set or discover correlation relationships among multiple pathways/gene sets. Draw a heatmap or create a network of your query and extract members of each pathway/gene set found in the available collections (MSigDB H hallmark, MSigDB C2 Canonical pathways, MSigDB C5 GO BP and Pathprint).

Package details

AuthorSokratis Kariotis, Yered Pita-Juarez, Winston Hide, Wenbin Wei
Bioconductor views ExperimentData ExpressionData GEO Homo_sapiens_Data MicroarrayData OneChannelData PathwayInteractionDatabase
MaintainerSokratis Kariotis <s.kariotis@sheffield.ac.uk>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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pcxn documentation built on Nov. 8, 2020, 10:58 p.m.