pcxn_heatmap: Draw a heatmap of a pcxn object
In pcxn: Exploring, analyzing and visualizing functions utilizing the pcxnData package
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Draw a heatmap of a pcxn object where color represents correlation
coefficients.
Usage
1
pcxn_heatmap(object, cluster_method = "complete")
Arguments
object
pcxn object created by pcxn_explore or pcxn_analyze functions
cluster_method
clustering method drawn from:
"ward.D", "ward.D2", "single", "complete", "average",
"mcquitty", "median", "centroid"
Value
a pheatmap object
Author(s)
Sokratis Kariotis
See Also
Examples
1
2
3
4
# Draw a heatmap of a pcxn object with a specific clustering method
object <- pcxn_explore("pathprint","Alzheimer's disease (KEGG)", 10, 0.05, 0.05)
pcxn_heatmap(object, "complete")
pcxn documentation built on Nov. 8, 2020, 10:58 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Draw a heatmap of a pcxn object where color represents correlation coefficients.
Usage
1 | pcxn_heatmap(object, cluster_method = "complete")
|
Arguments
object |
pcxn object created by pcxn_explore or pcxn_analyze functions |
cluster_method |
clustering method drawn from: "ward.D", "ward.D2", "single", "complete", "average", "mcquitty", "median", "centroid" |
Value
a pheatmap object
Author(s)
Sokratis Kariotis
See Also
Examples
1 2 3 4 | # Draw a heatmap of a pcxn object with a specific clustering method
object <- pcxn_explore("pathprint","Alzheimer's disease (KEGG)", 10, 0.05, 0.05)
pcxn_heatmap(object, "complete")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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