HELP: Tools for HELP data analysis

The package contains a modular pipeline for analysis of HELP microarray data, and includes graphical and mathematical tools with more general applications.

AuthorReid F. Thompson <reid.thompson@gmail.com>, John M. Greally <john.greally@einstein.yu.edu>, with contributions from Mark Reimers <mreimers@vcu.edu>
Date of publicationNone
MaintainerReid F. Thompson <reid.thompson@gmail.com>
LicenseGPL (>= 2)
Version1.32.0

View on Bioconductor

Files in this package

HELP/DESCRIPTION
HELP/NAMESPACE
HELP/R
HELP/R/calcGC.R HELP/R/calcPrototype.R HELP/R/calcTm.R HELP/R/combineData.R HELP/R/createWiggle.R HELP/R/exprs2.R HELP/R/fuzzyMatches.R HELP/R/getFeatures.R HELP/R/getSamples.R HELP/R/plotBins.R HELP/R/plotChip.R HELP/R/plotFeature.R HELP/R/plotPairs.R HELP/R/quantileNormalize.R HELP/R/readDesign.R HELP/R/readPairs.R HELP/R/readSampleKey.R
HELP/build
HELP/build/vignette.rds
HELP/data
HELP/data/base.stacking.thermodynamics.RData
HELP/demo
HELP/demo/00Index
HELP/demo/pipeline.R
HELP/inst
HELP/inst/doc
HELP/inst/doc/HELP.R
HELP/inst/doc/HELP.Rnw
HELP/inst/doc/HELP.pdf
HELP/inst/pipeline.data
HELP/inst/pipeline.data/70989_532.pair.txt
HELP/inst/pipeline.data/70989_635.pair.txt
HELP/inst/pipeline.data/71083_532.pair.txt
HELP/inst/pipeline.data/71083_635.pair.txt
HELP/inst/pipeline.data/71420_532.pair.txt
HELP/inst/pipeline.data/71420_635.pair.txt
HELP/inst/pipeline.data/HELP.ndf.txt
HELP/inst/pipeline.data/HELP.ngd.txt
HELP/inst/pipeline.data/HELP.pos.txt
HELP/inst/pipeline.data/sample.key.txt
HELP/man
HELP/man/base.stacking.thermodynamics.Rd HELP/man/calcGC-methods.Rd HELP/man/calcGC.Rd HELP/man/calcPrototype-methods.Rd HELP/man/calcPrototype.Rd HELP/man/calcTm-methods.Rd HELP/man/calcTm.Rd HELP/man/combineData-methods.Rd HELP/man/combineData.Rd HELP/man/createWiggle-methods.Rd HELP/man/createWiggle.Rd HELP/man/exprs2-methods.Rd HELP/man/exprs2.Rd HELP/man/fuzzyMatches-methods.Rd HELP/man/fuzzyMatches.Rd HELP/man/getFeatures-methods.Rd HELP/man/getFeatures.Rd HELP/man/getSamples-methods.Rd HELP/man/getSamples.Rd HELP/man/plotBins-methods.Rd HELP/man/plotBins.Rd HELP/man/plotChip-methods.Rd HELP/man/plotChip.Rd HELP/man/plotFeature-methods.Rd HELP/man/plotFeature.Rd HELP/man/plotPairs-methods.Rd HELP/man/plotPairs.Rd HELP/man/quantileNormalize-methods.Rd HELP/man/quantileNormalize.Rd HELP/man/readDesign-methods.Rd HELP/man/readDesign.Rd HELP/man/readPairs-methods.Rd HELP/man/readPairs.Rd HELP/man/readSampleKey.Rd
HELP/vignettes
HELP/vignettes/HELP.Rnw
HELP/vignettes/HELP.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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