base.stacking.thermodynamics: Base-stacking thermodynamic parameters

In HELP: Tools for HELP data analysis

Description

Unified thermodynamic parameters (delta-S and delta-H values) for nearest-neighbor base stacking calculations

Usage

data(base.stacking.thermodynamics)

Format

A matrix with 2 columns and 16 rows. Column 1 indicates enthalpic parameters (dH) and column 2 indicates entropic parameters (dS). Rows indicate all possible 2bp combinations of "A", "T", "C", and "G" (e.g. "AC")

Source

Allawi, H.T. and SantaLucia, J., Jr. (1997) Thermodynamics and NMR of internal G.T mismatches in DNA, Biochemistry, 36, 10581-10594.

Examples

data(base.stacking.thermodynamics)

HELP documentation built on Nov. 8, 2020, 11:08 p.m.