lumi: BeadArray Specific Methods for Illumina Methylation and Expression Microarrays

The lumi package provides an integrated solution for the Illumina microarray data analysis. It includes functions of Illumina BeadStudio (GenomeStudio) data input, quality control, BeadArray-specific variance stabilization, normalization and gene annotation at the probe level. It also includes the functions of processing Illumina methylation microarrays, especially Illumina Infinium methylation microarrays.

Getting started

Package details

AuthorPan Du, Richard Bourgon, Gang Feng, Simon Lin
Bioconductor views DNAMethylation Microarray OneChannel Preprocessing QualityControl TwoChannel
MaintainerLei Huang <>
LicenseLGPL (>= 2)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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lumi documentation built on Nov. 8, 2020, 5:27 p.m.