colorBiasSummary: A summary of colorBias information

In lumi: BeadArray Specific Methods for Illumina Methylation and Expression Microarrays

Description

A summary of colorBias information, which is a data.frame summarizing the intensities of individual samples

Usage

colorBiasSummary(methyLumiM, logMode = TRUE, channel = c("both", "unmethy", "methy", "sum"))

Arguments

methyLumiM	MethyLumiM-class object or eSet-class object, which include methylated and unmethylated probe intensities
logMode	Whether plot the intensities in log-scale
channel	estimate the intensity in different methods

Details

A summary of colorBias information. There are four options using "channel" parameter to plot the density plot. "both": estimate the density by pooling together methylated and unmethylated probe intensities. "unmethy" and "methy": plot either unmethylated or methylated probe density. "sum" plot the density of the sum of methylatled and unmethylated probe intensitys.

Value

A data.frame summarizing the intensities of individual samples

Author(s)

Pan DU

lumi documentation built on Nov. 8, 2020, 5:27 p.m.