Files in lumi
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
NEWS
NAMESPACE
DESCRIPTION
data/example.lumiMethy.rda
data/example.lumi.rda
data/datalist
data/example.methyTitration.rda
R/produceMethylationGEOSubmissionFile.R
R/seq2id.R
R/inverseVST.R
R/getNuIDMappingInfo.R
R/monoSmu.R
R/getControlProbe.R
R/lumiT.R
R/detectOutlier.R
R/lumiN.R
R/nuID2IlluminaID.R
R/detectionCall.R
R/lumiExpresso.R
R/lumiB.R
R/plotHousekeepingGene.R
R/plotStringencyGene.R
R/AllGenerics.R
R/is.nuID.R
R/addControlData2lumi.R
R/id2seq.R
R/plotSampleRelation.R
R/nuIDMapping.R
R/lumiR.batch.R
R/IlluminaID2nuID.R
R/plotControlData.R
R/rsn.R
R/lumiR.R
R/estimateLumiCV.R
R/produceGEOSubmissionFile.R
R/methylation_preprocessing.R
R/bgAdjust.R
R/zzz.R
R/plotVST.R
R/ssn.R
R/LumiBatch-class.R
R/plotCDF.R
R/produceGEOPlatformFile.R
R/getChipInfo.R
R/getControlData.R
R/lumiQ.R
R/nuID2RefSeqID.R
R/nuID2EntrezID.R
R/vst.R
R/monoSpline.R
R/addNuID2lumi.R
R/getControlType.R
R/produceGEOSampleInfoTemplate.R
R/rankinvariant.R
vignettes/lumi_VST_evaluation.R
vignettes/IlluminaAnnotation.R
vignettes/lumi_VST_evaluation.pdf
vignettes/methylationAnalysis.R
vignettes/methylationAnalysis.pdf
vignettes/IlluminaAnnotation.pdf
vignettes/lumi.R
vignettes/lumi.pdf
man/addNuID2lumi.Rd
man/IlluminaID2nuID.Rd
man/getControlType.Rd
man/nuID2IlluminaID.Rd
man/addAnnotationInfo.Rd
man/lumiT.Rd
man/plotVST.Rd
man/monoSmu.Rd
man/plotSampleRelation.Rd
man/produceMethylationGEOSubmissionFile.Rd
man/boxplot-methods.Rd
man/probeID2nuID.Rd
man/m2beta.Rd
man/lumiMethyStatus.Rd
man/asBigMatrix-methods.Rd
man/normalizeMethylation.ssn.Rd
man/LumiBatch-class.Rd
man/MAplot-methods.Rd
man/vst.Rd
man/nuID2probeID.Rd
man/lumi.package.Rd
man/nuID2targetID.Rd
man/estimateBeta.Rd
man/addControlData2lumi.Rd
man/colorBiasSummary.Rd
man/getControlProbe.Rd
man/getNuIDMappingInfo.Rd
man/plotColorBias2D.Rd
man/ssn.Rd
man/nuID2RefSeqID.Rd
man/plotColorBias1D.Rd
man/targetID2nuID.Rd
man/adjColorBias.quantile.Rd
man/lumiQ.Rd
man/produceGEOPlatformFile.Rd
man/lumiN.Rd
man/plotGammaFit.Rd
man/monoSpline.Rd
man/seq2id.Rd
man/plotControlData.Rd
man/getControlData.Rd
man/beta2m.Rd
man/detectOutlier.Rd
man/getChipInfo.Rd
man/lumiR.Rd
man/adjColorBias.ssn.Rd
man/boxplot-MethyLumiM-methods.Rd
man/lumiExpresso.Rd
man/normalizeMethylation.quantile.Rd
man/lumiR.batch.Rd
man/produceGEOSubmissionFile.Rd
man/methylationCall.Rd
man/density-methods.Rd
man/estimateLumiCV.Rd
man/bgAdjustMethylation.Rd
man/getChrInfo.Rd
man/addControlData2methyLumiM.Rd
man/bgAdjust.Rd
man/pairs-methods.Rd
man/smoothQuantileNormalization.Rd
man/inverseVST.Rd
man/lumiMethyN.Rd
man/example.lumiMethy.Rd
man/hist-methods.Rd
man/lumiMethyC.Rd
man/importMethyIDAT.Rd
man/lumiB.Rd
man/id2seq.Rd
man/detectionCall.Rd
man/produceGEOSampleInfoTemplate.Rd
man/plotHousekeepingGene.Rd
man/lumiMethyB.Rd
man/plot-methods.Rd
man/nuID2EntrezID.Rd
man/gammaFitEM.Rd
man/estimateM.Rd
man/lumiMethyR.Rd
man/rankinvariant.Rd
man/example.lumi.Rd
man/is.nuID.Rd
man/estimateIntensity.Rd
man/rsn.Rd
man/boxplotColorBias.Rd
man/plotCDF.Rd
man/plotDensity.Rd
man/example.methyTitration.Rd
man/plotStringencyGene.Rd
man/estimateMethylationBG.Rd
inst/CITATION
