normalizeMethylation.ssn: Shift and scaling normalization of Illumina Infinium...
In lumi: BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/methylation_preprocessing.R
Description
Shift and scaling normalization of Illumina Infinium methylation data at probe level
Usage
1
normalizeMethylation.ssn(methyLumiM, separateColor = FALSE)
Arguments
methyLumiM
a MethyLumiM object includes Illumina Infinium methylation data
separateColor
determine whether separately normalize two color channels
Value
Return an object (same class as input methyLumiM) with updated "methylated" and "unmethylated" data matrix after background level adjustment.
Author(s)
Pan DU
See Also
See Also lumiMethyN, and normalizeMethylation.quantile
Examples
1
2
data(example.lumiMethy)
lumiMethy.norm = normalizeMethylation.ssn(example.lumiMethy)
lumi documentation built on Nov. 8, 2020, 5:27 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/methylation_preprocessing.R
Description
Shift and scaling normalization of Illumina Infinium methylation data at probe level
Usage
1 | normalizeMethylation.ssn(methyLumiM, separateColor = FALSE)
|
Arguments
methyLumiM |
a MethyLumiM object includes Illumina Infinium methylation data |
separateColor |
determine whether separately normalize two color channels |
Value
Return an object (same class as input methyLumiM) with updated "methylated" and "unmethylated" data matrix after background level adjustment.
Author(s)
Pan DU
See Also
See Also lumiMethyN, and normalizeMethylation.quantile
Examples
1 2 | data(example.lumiMethy)
lumiMethy.norm = normalizeMethylation.ssn(example.lumiMethy)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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